Structure #175574

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr7
Strand	-
Position	137,584,601 - 137,584,719
Number of sequences	4
Organisms	human, dog, mouse, rat
Mean pairwise identity	83.17
Columns	120
Mean single MFE	-52.45
Consensus MFE	-39.76
Combinations/base pair	41 / 32 = 1.28
SCI	0.76
z-score	-2.18
RNA class probability	0.936923
Warning	Base composition out of range

This structure is part of cluster 97299

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  83.17
 Mean single sequence MFE: -52.45
 Consensus MFE: -39.76
 Energy contribution: -38.95
 Covariance contribution:  -0.81
 Mean z-score:  -2.18
 Structure conservation index:   0.76
 SVM decision value:   1.26
 SVM RNA-class probability: 0.936923
 Prediction: RNA

######################################################################

>hg17.chr7/137584719-137584601
AGUCCAGGGCCAGGGAAGGGGGCAGAGACCUCCCCUUGGCCUAGGUCAGGAGCUCAGAAGUGCCACAGGCUGAGGGGGCAGCGGCCCAGGAAGGGCCAGAGGCAGGGCCAGGAGAGCA
..(((.(((((((((..(((((......)))))))))))))).((((....(((....)))(((....((((......))))(((((.....)))))...)))..)))).)))..... ( -55.40)
>canFam1.chr??/2169-2049
GUCCAGGGCCAGGGGAAGGGGGCAGAGACCUCCCUCUGGCCUAGGUCAGGAGCCCAGAAGUGCCACAUGGCUGAGGGGGCGACAGCCCAGGAAGGGGCCAGAGGCAGGGCCAGGAGAGCA
.(((.((((((((((..((((.......)))))))))))))).((((.(..((((......(((....))).....))))..).((((......)))).........)))).)))..... ( -56.30)
>mm5.chr6/2144-2263
GCCUCAAGCCAGAGGAAGGGGGCAGAGACCUCCCCCUGGCCUAGGUCCAGAACCCACAGUGCCACAUGGCUGAGAGGACAGCACUCCAGGGACGGGCCAGAGGCAGGGUCAGGAGAGCA
(((((..(((((.((..(((((......))))))))))))...(((((....(((.....(((....)))((.(((.......))))))))..))))).)))))..(.((....)).). ( -49.50)
>rn3.chr4/2213-2332
GCCUCAAGCCAGAGGAAGGGGGCAGAGACCUCCCCCUGGCCUAGGGUCAGAACCCACAGUGCCACAUGGCUGAGAGGACAGCACUCCAAGGAUGGGUCAGAGGCAGGGUCAGGAGAGCA
.((((.(((((.....((((((.((....))))))))(((((.((((....))))..)).)))...)))))..))))...((.((((...(((..((.....))...))).)))).)). ( -48.60)
>consensus
GCCCCAAGCCAGAGGAAGGGGGCAGAGACCUCCCCCUGGCCUAGGUCAAGAACCCA_AAGUGCCACAUGGCUGAGAGGACAGCACCCCAGGAA_GGGCCAGAGGCAGGGCCAGGAGAGCA
.((((......))))..(((((......))))).((((((((.((........)).....((((...(((((....((((....)))).......)))))..))))))))))))...... (-39.76 = -38.95 +  -0.81)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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