Structure #176077

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr7
Strand	-
Position	156,867,247 - 156,867,336
Number of sequences	4
Organisms	human, dog, mouse, rat
Mean pairwise identity	73.86
Columns	89
Mean single MFE	-25.95
Consensus MFE	-23.48
Combinations/base pair	35 / 24 = 1.46
SCI	0.9
z-score	-3.41
RNA class probability	0.999925

This structure is part of cluster 97787

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 89
 Columns: 89
 Strand: +
 Mean pairwise identity:  73.86
 Mean single sequence MFE: -25.95
 Consensus MFE: -23.48
 Energy contribution: -20.85
 Covariance contribution:  -2.63
 Mean z-score:  -3.41
 Structure conservation index:   0.90
 SVM decision value:   4.59
 SVM RNA-class probability: 0.999925
 Prediction: RNA

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>hg17.chr7/156867336-156867247
CAUCCAGUGUGUUUGCACGUAUAUGCAUAUGGGCACGUUGCUAUGUCCAUAUCCAUAUAUGGACGGGAACAUGUACAUCACCGACCCUC
..(((.((((....))))(((((((.(((((((((........))))))))).))))))))))(((((.........)).)))...... ( -27.20)
>canFam1.chr16/21781079-21780991
CAUCCAGUGUGUUUGUACAUAUAUGCAUAUGGGUGGAUGCCGAAACCCAUAUCCAUAUAUGGAUCUGAACAAUACACAACCAACCCUC
......(((((((.((.((((((((.((((((((..........)))))))).)))))))).......)))))))))........... ( -25.60)
>mm5.chr12/2836484-2836567
CAUCCAAGGGGUUUGCACAUAUAUGUGUAUAGGCCCGUGUCUGUAUUCAUAUAUGGAAUGAAACAUACCCAUAUCCAGCCCUC
.......((((((.....(((((((.((((((((....)))))))).)))))))((((((.........))).))))))))). ( -23.60)
>rn3.chr6/3116240-3116323
CAUCCAAGGGGUUUGCACAUAUAUGUGUAUAGGCCCAUGUCUGUAUUCAUAUAUGGAAUGGAACAUACCCAUAUCCAGCCCUC
.......((((((.....(((((((.((((((((....)))))))).)))))))(((((((.......)))).))))))))). ( -27.40)
>consensus
CAUCCAAGGGGUUUGCACAUAUAUGCAUAUAGGCCCAU______GUCCAUAUCCAUAUAUGGAAUGGAACAUACACAUAACCAACCCUC
......((((((.((..((((((((.((((((((..........)))))))).))))))))........)).))))))........... (-23.48 = -20.85 +  -2.63)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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