Structure #176442

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr8
Strand	+
Position	10,576,025 - 10,576,142
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	80.22
Columns	120
Mean single MFE	-45.67
Consensus MFE	-31.3
Combinations/base pair	48 / 37 = 1.30
SCI	0.69
z-score	-2.92
RNA class probability	0.997154

This structure is part of cluster 98003

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  80.22
 Mean single sequence MFE: -45.67
 Consensus MFE: -31.30
 Energy contribution: -31.49
 Covariance contribution:   0.19
 Mean z-score:  -2.92
 Structure conservation index:   0.69
 SVM decision value:   2.81
 SVM RNA-class probability: 0.997154
 Prediction: RNA

######################################################################

>hg17.chr8/10576025-10576142
AGAGCUCUGCCAGGACAGCUGCCAGUGCAGUUUAUCUCCCAGUCCGAUCAGGCCUUGGCGCAGGGAGGGAAGGUGGCCCUUUCUUCAAAAGCUUCAGCUGGCUCUGGCCUGGCAAAC
.......(((((((.(((..((((((..(((((..(((((.((((((.......)))).)).)))))((((((....)))))).....)))))...)))))).))).)))))))... ( -49.50)
>mm5.chr14/61106774-61106656
AGAGCCCUGCCAGGAUGGCUGCCAACUCAGCUUAUCUCCUUGCCCAAUCGAGCCCAGCUCUGGGAGGGAAAGGGCGGCCCUUUAUUCAAAAGCAUAAGCUGAUUCCAUCCUGGCAGAG
......((((((((((((........(((((((((((((((.((((...((((...))))))))))))((((((...)))))).......)).)))))))))..)))))))))))).. ( -52.30)
>rn3.chr15/66510665-66510547
AGAGCCCUGCCAGGACGGCUGCCAACUCAGCUUAUCUCCUUGCCCAAUCGAGCCCAGCACUGGGAGGGAAAGGGCGGCCCUUUAUUCAAAAGCAUAAGCUGAUUCCAUCCUGGCAAAG
.......((((((((.((........(((((((((....((((((..((...((((....))))...))..))))))..((((.....)))).)))))))))..)).))))))))... ( -41.10)
>canFam1.chr25/24163117-24162998
AGAGCUUUGACAGGACAGCUGCCAGCCCAGCUUAUCUCCUGGCCCAAUCAGGCCUUUAUACCAGGAGGGAAAGAGCUGCUCUUUAUUCAAAAACAUAAGCUGAUUCUGUCCUGGCAAAU
...(((..((((((((((((...((..((((((.((((((((((......))))........))))))....))))))..))...............))))).)))))))..))).... ( -39.77)
>consensus
AGAGCCCUGCCAGGACAGCUGCCAACUCAGCUUAUCUCCUUGCCCAAUCAAGCC_CAGCACUGGGAGGGAAAGGGCGGCCCU_UUAUUCAAAAGCAUAAGCUGAUUCCAUCCUGGCAAAG
......((((((((((((.....((.((((((((((((((.((..............))...))))))(((((((...))))....))).......)))))))))))))))))))))).. (-31.30 = -31.49 +   0.19)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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