Structure #176444

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr8
Strand	-
Position	10,576,025 - 10,576,142
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	80.22
Columns	120
Mean single MFE	-51.23
Consensus MFE	-40.51
Combinations/base pair	54 / 39 = 1.38
SCI	0.79
z-score	-3.59
RNA class probability	0.999708

This structure is part of cluster 98003

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  80.22
 Mean single sequence MFE: -51.22
 Consensus MFE: -40.51
 Energy contribution: -40.70
 Covariance contribution:   0.19
 Mean z-score:  -3.59
 Structure conservation index:   0.79
 SVM decision value:   3.92
 SVM RNA-class probability: 0.999708
 Prediction: RNA

######################################################################

>hg17.chr8/10576142-10576025
GUUUGCCAGGCCAGAGCCAGCUGAAGCUUUUGAAGAAAGGGCCACCUUCCCUCCCUGCGCCAAGGCCUGAUCGGACUGGGAGAUAAACUGCACUGGCAGCUGUCCUGGCAGAGCUCU
.(((((((((.(((.(((((.((..((((((.....))))))........(((((...((....))((....))...)))))........)))))))..))).)))))))))..... ( -42.80)
>mm5.chr14/61106656-61106774
CUCUGCCAGGAUGGAAUCAGCUUAUGCUUUUGAAUAAAGGGCCGCCCUUUCCCUCCCAGAGCUGGGCUCGAUUGGGCAAGGAGAUAAGCUGAGUUGGCAGCCAUCCUGGCAGGGCUCU
((((((((((((((..(((((((((((((((.....)))))).((((..((...((((....))))...))..))))......)))))))))........)))))))))))))).... ( -59.40)
>rn3.chr15/66510547-66510665
CUUUGCCAGGAUGGAAUCAGCUUAUGCUUUUGAAUAAAGGGCCGCCCUUUCCCUCCCAGUGCUGGGCUCGAUUGGGCAAGGAGAUAAGCUGAGUUGGCAGCCGUCCUGGCAGGGCUCU
((((((((((((((..(((((((((((((((.....)))))).((((..((...((((....))))...))..))))......)))))))))........)))))))))))))).... ( -56.50)
>canFam1.chr25/24162998-24163117
AUUUGCCAGGACAGAAUCAGCUUAUGUUUUUGAAUAAAGAGCAGCUCUUUCCCUCCUGGUAUAAAGGCCUGAUUGGGCCAGGAGAUAAGCUGGGCUGGCAGCUGUCCUGUCAAAGCUCU
.((((.((((((((..(((((((((((((((.....)))))))(((......((((((((.(((........))).))))))))...)))))))))))...)))))))).))))..... ( -46.20)
>consensus
CUUUGCCAGGACAGAAUCAGCUUAUGCUUUUGAAUAA_AGGGCCGCCCUUUCCCUCCCAGUGCUA_GGCCCGAUUGGGCAAGGAGAUAAGCUGAGCUGGCAGCCGUCCUGGCAGAGCUCU
((((((((((((((..((((((((.((((..........(((...))).....(((((........(((((....))))))))))..))))))))))))...)))))))))))))).... (-40.51 = -40.70 +   0.19)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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