Structure #176451

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr8
Strand	-
Position	10,576,065 - 10,576,182
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	78.65
Columns	120
Mean single MFE	-47.2
Consensus MFE	-24.62
Combinations/base pair	35 / 30 = 1.17
SCI	0.52
z-score	-2.31
RNA class probability	0.753117

This structure is part of cluster 98003

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  78.65
 Mean single sequence MFE: -47.20
 Consensus MFE: -24.62
 Energy contribution: -26.38
 Covariance contribution:   1.75
 Mean z-score:  -2.31
 Structure conservation index:   0.52
 SVM decision value:   0.48
 SVM RNA-class probability: 0.753117
 Prediction: RNA

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>hg17.chr8/10576182-10576065
CUUCUGGCCUGGUGUGGAGAGCAGAACGUCCUGGAGAGGCGUUUGCCAGGCCAGAGCCAGCUGAAGCUUUUGAAGAAAGGGCCACCUUCCCUCCCUGCGCCAAGGCCUGAUCGGACU
..((.(((((((((..(.((((((...(..((((...(((....)))...))))..)...)))..((((((.....))))))........))).)..)))).))))).))....... ( -44.30)
>mm5.chr14/61106696-61106813
CUUCUGGCCUGGAAUCGAGGCCAGAAGAUCCUGGGAGCCCUCUGCCAGGAUGGAAUCAGCUUAUGCUUUUGAAUAAAGGGCCGCCCUUUCCCUCCCAGAGCUGGGCUCGAUUGGGCA
((((((((((.(...).))))))))))(((((((.((....)).))))))).............((((((.....)))))).((((..((...((((....))))...))..)))). ( -51.70)
>rn3.chr15/66510587-66510704
CUUCUGGCCUGGAAUCGAGGCCAGGAGAUCCUGGGAGCCCUUUGCCAGGAUGGAAUCAGCUUAUGCUUUUGAAUAAAGGGCCGCCCUUUCCCUCCCAGUGCUGGGCUCGAUUGGGCA
((((((((((.(...).))))))))))(((((((.((....)).))))))).............((((((.....)))))).((((..((...((((....))))...))..)))). ( -49.40)
>canFam1.chr25/24163038-24163157
CAUCUGGCCUGGGGUUGAGACCAGAAUAUCCUGGUGAACCAUUUGCCAGGACAGAAUCAGCUUAUGUUUUUGAAUAAAGAGCAGCUCUUUCCCUCCUGGUAUAAAGGCCUGAUUGGGCC
.(((.(((((..((((...(((((......))))).))))...((((((((..(((..((((...((((((.....))))))))))..)))..))))))))...))))).)))...... ( -43.40)
>consensus
CUUCUGGCCUGGAAUCGAGACCAGAAGAUCCUGG_GAGCCCUUUGCCAGGACAGAAUCAGCUUAUGCUUUUGAAUAA_AGGGCCGCCCUUUCCCUCCCAGUGCUA_GGCCCGAUUGGGCA
((((((((((.......))))))))))(((((((...........))))))).............(((((........))))).((((..((...((.........))...))..)))). (-24.62 = -26.38 +   1.75)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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