Structure #176454

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr8
Strand	+
Position	10,576,103 - 10,576,217
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	78.49
Columns	120
Mean single MFE	-38.32
Consensus MFE	-23.8
Combinations/base pair	25 / 21 = 1.19
SCI	0.62
z-score	-2.91
RNA class probability	0.997284

This structure is part of cluster 98003

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  78.49
 Mean single sequence MFE: -38.32
 Consensus MFE: -23.80
 Energy contribution: -24.42
 Covariance contribution:   0.63
 Mean z-score:  -2.91
 Structure conservation index:   0.62
 SVM decision value:   2.83
 SVM RNA-class probability: 0.997284
 Prediction: RNA

######################################################################

>hg17.chr8/10576103-10576217
CUUUCUUCAAAAGCUUCAGCUGGCUCUGGCCUGGCAAACGCCUCUCCAGGACGUUCUGCUCUCCACACCAGGCCAGAAGAAGGAGUCCUUUCCUUGUGCCUUCUUGGCCAGCCU
..................(((((((((((((((((((((((((....))).)))).))).........))))))))(((((((...(........)..)))))))))))))).. ( -42.00)
>mm5.chr14/61106850-61106735
CUUUAUUCAAAAGCAUAAGCUGAUUCCAUCCUGGCAGAGGGCUCCCAGGAUCUUCUGGCCUCGAUUCCAGGCCAGAAGAAAGAGGUCUGUACUUGGCACCUUCUUGGGCCAGCCU
............((....((.(((..(.((((((.((....)).))))))(((((((((((.......)))))))))))..)..))).))...((((.((.....)))))))).. ( -44.10)
>rn3.chr15/66510741-66510626
CUUUAUUCAAAAGCAUAAGCUGAUUCCAUCCUGGCAAAGGGCUCCCAGGAUCUCCUGGCCUCGAUUCCAGGCCAGAAGAAAGAGGUCUGUACUUGGCACCUUCUUGGACCAGCCU
..................((((..(((.((((((..........))))))(((.(((((((.......))))))).)))(((((((((......)).))).))))))).)))).. ( -36.00)
>canFam1.chr25/24163191-24163078
CUUUAUUCAAAAACAUAAGCUGAUUCUGUCCUGGCAAAUGGUUCACCAGGAUAUUCUGGUCUCAACCCCAGGCCAGAUGAGAGUCCUGUCGACCUCACCCCUUCUGCCAGUCU
..................((((..((((.(((((.....((((.((((((....))))))...))))))))).))))((((.(((.....)))))))..........)))).. ( -31.20)
>consensus
CU_UUAUUCAAAAGCAUAAGCUGAUUCCAUCCUGGCAAAGGGCUC_CCAGGAUCUUCUGGCCUCGACUCCAGGCCAGAAGAAAGAGGCCUGU___ACUU_GCACCUUCUU_GGCCAGCCU
...................((((.....(((((((...........)))))))((((((((((.......))))))))))..................................)))).. (-23.80 = -24.42 +   0.63)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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