Structure #177820
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr8 |
| Strand | - |
| Position | 32,623,527 - 32,623,634 |
| Number of sequences | 5 |
| Organisms | human, dog, mouse, rat, chicken |
| Mean pairwise identity | 72.27 |
| Columns | 120 |
| Mean single MFE | -42.31 |
| Consensus MFE | -24.7 |
| Combinations/base pair | 46 / 34 = 1.35 |
| SCI | 0.58 |
| z-score | -1.63 |
| RNA class probability | 0.747513 |
| Warning | Base composition out of range |
This structure is part of cluster 98796
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 5 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 72.27 Mean single sequence MFE: -42.31 Consensus MFE: -24.70 Energy contribution: -25.86 Covariance contribution: 1.16 Mean z-score: -1.63 Structure conservation index: 0.58 SVM decision value: 0.47 SVM RNA-class probability: 0.747513 Prediction: RNA ###################################################################### >hg17.chr8/32623634-32623527 AAGCUGGGAUGGGGAUGGGGUGGGGGGUGGUGUAGGUGGGACCUUAUGGGUUGGACCUGAGGCUUGAAGUCUGCUAUCUGAUUCCUCCCUAGAGAGGUAAGCUUUUC .....((((..(((((.((((((.(((.(((.(((((..((((.....))))..)))))..))).....))).)))))).)))))))))..((((((....)))))) ( -38.70) >canFam1.chr16/26632721-26632822 AAGCUGGGAUGGGGCGGGGGAUGUAGGUGGGACCUUCUGGGUUGGACCUGAGGCUUGGCAAAGUCUGAUAUCUGAUUCCUCCCUAGAGAGGUAAGCUUUUC .........(((((.(((((((((((((..((((.....))))..)))).((((((....)))))).))))))...))).)))))((((((....)))))) ( -33.70) >mm5.chr8/97816067-97816179 AAGCUGGGAUGGAGGGGGAUGGGGUGGGGGGUGGAGGUGGGGACCUUCUGGGUUAGACCUGAGGCUUGGCAAAGUCUGAUCUCUGACUCCUCCCCAGAGAGGUAGGCUUUUC (((((.........(((((.(((((.(((((((((((.(....))))))(((.....))).((((((....)))))).)))))).)))))))))).........)))))... ( -45.27) >rn3.chr16/64026298-64026187 AAGCUGGGAUGGAGGGGGUGGGGUGGAUGGUGGAGGUGGGACCUUCUGGGUUAAACCUGAGGCUUUGGCAAAGUCUGAUCUCUGACUCCUCCCCAGAGAGGUAGGCUUUUC (((((.........((((.((((((((.(((..((((..((((.....))))..)))).((((((.....)))))).)))))).))))).)))).........)))))... ( -39.57) >galGal2.chrZ/7757542-7757639 GGAGGGCGAGGACGGGUGUAGGUGGGACCGCGCCGGGCUGCGCGGGGCUCGCCGAGGCCGGCAACACCCGAUCCCUCCCGGGGGAAGCCCGCUUUUC ((((((((.((.(((((((....(((.((((((......))))))..)))((((....)))).))))))).(((((....)))))..)))))))))) ( -54.30) >consensus AAGCUGGGAUGG____GGAUGGGGUGGG_GGGUGG___AGGUGGG_ACCUU_CUGGGUUGGACCUGAGGCUUGG_CAAAGUCUG__AUAUCUGAUUCCUCCCCAGAGAGGUAAGCUUUUC ...................(((((.(((.((((((...((((....((((....))))...)))).((((((.....))))))...))))))...))).)))))((((((....)))))) (-24.70 = -25.86 + 1.16)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
