Structure #177822

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr8
Strand	+
Position	32,623,599 - 32,623,687
Number of sequences	4
Organisms	human, dog, mouse, rat
Mean pairwise identity	82.7
Columns	96
Mean single MFE	-17.29
Consensus MFE	-12.94
Combinations/base pair	21 / 19 = 1.11
SCI	0.75
z-score	-1.49
RNA class probability	0.537097

This structure is part of cluster 98796

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 96
 Columns: 96
 Strand: +
 Mean pairwise identity:  82.70
 Mean single sequence MFE: -17.29
 Consensus MFE: -12.94
 Energy contribution: -13.06
 Covariance contribution:   0.13
 Mean z-score:  -1.49
 Structure conservation index:   0.75
 SVM decision value:   0.01
 SVM RNA-class probability: 0.537097
 Prediction: RNA

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>hg17.chr8/32623599-32623687
CUACACCACCCCCCACCCCAUCCCCAUCCCAGCUUUGUUAGAUUGCUAGCAUCGAUCGCUGGCUUUCUCUGACCCAACAGUGGGUGAA
....................(((((((.........((((((..((((((.......))))))....))))))......))))).)). ( -21.06)
>canFam1.chr16/26632875-26632796
CUACAUCCCCCGCCCCAUCCCAGCUUUGUUUGAUUGCUAGCAUCGAUCGCUGGCUUUUUCUGACCCAACAGUGGGUGAA
..........(((((....(((((.....(((((.(....))))))..)))))......(((......))).))))).. ( -17.90)
>mm5.chr8/97816235-97816143
CUCCACCCCCCACCCCAUCCCCCUCCAUCCCAGCUUUGUUAGAUUGCUAGCAUCAUCGAUCCCUGGCUUUUUCUGACCCCACAGUGGGUGAA
..........((((((......((.......))....((((((..(((((.(((...)))..)))))....))))))......).))))).. ( -16.70)
>rn3.chr16/64026263-64026352
CUCCACCAUCCACCCCACCCCCUCCAUCCCAGCUUUGUUAGAUUGCCAGCAUUGAUUCCCUGCCUUUUUCUGACCCCACAGUGGGUGAA
......(((((((........((.......))....((((((......(((.........))).....))))))......))))))).. ( -13.50)
>consensus
CU___CCACCCCCCACCCCAUCC____CCAUCCCAGCUUUGUUAGAUUGCUAG___CAUCGA_UCCCUGGCUUUUUCUGACCCAACAGUGGGUGAA
.............(((((.................(((..((((((..(((((.............)))))....)))))).....)))))))).. (-12.94 = -13.06 +   0.13)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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