Structure #178898
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr8 |
| Strand | + |
| Position | 60,104,118 - 60,104,238 |
| Number of sequences | 5 |
| Organisms | human, dog, mouse, rat, chicken |
| Mean pairwise identity | 80.23 |
| Columns | 120 |
| Mean single MFE | -30.76 |
| Consensus MFE | -18.08 |
| Combinations/base pair | 36 / 31 = 1.16 |
| SCI | 0.59 |
| z-score | -3.3 |
| RNA class probability | 0.997482 |
This structure is part of cluster 99450
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 5 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 80.23 Mean single sequence MFE: -30.76 Consensus MFE: -18.08 Energy contribution: -21.24 Covariance contribution: 3.16 Mean z-score: -3.30 Structure conservation index: 0.59 SVM decision value: 2.87 SVM RNA-class probability: 0.997482 Prediction: RNA ###################################################################### >hg17.chr8/60104118-60104238 CAGCAUACAAAUAGAUAAUUGCUCGUUUUGGGACAGAAAUACUUUACAACUAAAGUACUUUCCCUCGGAGGAAAUCGUACUGUCAUUUGUUUUUAUUUUCAAAAUGAAAACAAAUGGCAC .............(((..((.(((.....((((.((...(((((((....))))))))).))))...))).)))))....(((((((((((((((((.....))))))))))))))))). ( -31.60) >canFam1.chr29/12765031-12765151 CAGCAUCCAAAUAGAUAAUUGCUUGUUUGGGGGCAGGAACGCUUUAGAACUCAAGUACUUUUUCCCCAAGGGAAUCAUACUGUCAUUUGUUUUUAUUUUCAAAACGAAAACAAAUGGCAC ..((..((((((((........))))))))..))...................((((....(((((...)))))...))))((((((((((((..((.....))..)))))))))))).. ( -31.50) >mm5.chr4/6839949-6840068 CAGCAUAAAAUAGAUAAUUGCUCAUGAGGGAGCAGAAACAUUUUCUAACUAAAGUACUUUCCCCUCAAGGGGACUACACUGUCAUUUGUUUUUAUCUUUAAAAUGAAAACAAACUGAGC (((.........((((.((((((......))))))..................(((...(((((....))))).)))..)))).(((((((((((.......))))))))))))))... ( -27.80) >rn3.chr5/20521707-20521826 CAGCAUAAAAUAGAUAAUUGCUCGUGAGGGAGCAGGAACAUUUUGUAACUAAAGUACUUUCCCCUGGAGGGGACUGCACUGUCAUUUGUUUUUAUCUUUAAAAUGAAAACAAACUGAGC ...................((((((((.((.((((....((((((....))))))....(((((....))))))))).)).))))((((((((((.......))))))))))...)))) ( -32.40) >galGal2.chr2/0-118 CAGCUUACAAAUAGAUAAUAACUUCUUUUUGUCAGAGAUUCUUUAUAGCUAAAGUACUUCCCCCUCAGGGAAUCAUACUGUCAUUUGUUUUUAUUUUCAAAAUGAAAACAAAUGGCAU .((((.(((((.(((........))).))))).((((...))))..))))..((((.(((((.....)))))...))))((((((((((((((((.....)))))))))))))))).. ( -30.50) >consensus CAGCAUACAAAUAGAUAAUUGCUCGUUUGGGAGCAGAAACACUUUAUAACUAAAGUACUUUCCCCUCAAGGGAAUCAUACUGUCAUUUGUUUUUAUUUUCAAAAUGAAAACAAAUGGCAC ..................((((((......)))))).................((((...(((((....)))))...))))((((((((((((((((.....)))))))))))))))).. (-18.08 = -21.24 + 3.16)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
