Structure #178902
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr8 |
| Strand | + |
| Position | 60,104,158 - 60,104,278 |
| Number of sequences | 5 |
| Organisms | human, dog, mouse, rat, chicken |
| Mean pairwise identity | 79.08 |
| Columns | 120 |
| Mean single MFE | -32.28 |
| Consensus MFE | -23.2 |
| Combinations/base pair | 49 / 39 = 1.26 |
| SCI | 0.72 |
| z-score | -4.49 |
| RNA class probability | 0.99961 |
This structure is part of cluster 99450
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 5 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 79.08 Mean single sequence MFE: -32.28 Consensus MFE: -23.20 Energy contribution: -25.72 Covariance contribution: 2.52 Mean z-score: -4.49 Structure conservation index: 0.72 SVM decision value: 3.78 SVM RNA-class probability: 0.999610 Prediction: RNA ###################################################################### >hg17.chr8/60104158-60104278 ACUUUACAACUAAAGUACUUUCCCUCGGAGGAAAUCGUACUGUCAUUUGUUUUUAUUUUCAAAAUGAAAACAAAUGGCACUAUAAUUCCUAAGGGCAAAAAUGACUUCAGUCUAUUUCUU ((((((....))))))..(((((((...(((((...(((.(((((((((((((((((.....))))))))))))))))).)))..))))).)))).)))...(((....)))........ ( -33.70) >canFam1.chr29/12765071-12765191 GCUUUAGAACUCAAGUACUUUUUCCCCAAGGGAAUCAUACUGUCAUUUGUUUUUAUUUUCAAAACGAAAACAAAUGGCACUAUGUUUCCUAAGGGCAAAAAUGACUUCAGUCUAUUUCUU ....((((.((.((((..(((((.(((..(((((.((((.(((((((((((((..((.....))..))))))))))))).)))).)))))..))).)))))..)))).))))))...... ( -39.30) >mm5.chr4/6839988-6840108 AUUUUCUAACUAAAGUACUUUCCCCUCAAGGGGACUACACUGUCAUUUGUUUUUAUCUUUAAAAUGAAAACAAACUGAGCUCCAAUUCCUGAGGACAAGAACGACUUCUGCCAUUCUCUU ..............(((...(((((....))))).)))....((((((((((((((.......))))))))))).)))............(((((..((((....))))....))))).. ( -23.70) >rn3.chr5/20521746-20521866 AUUUUGUAACUAAAGUACUUUCCCCUGGAGGGGACUGCACUGUCAUUUGUUUUUAUCUUUAAAAUGAAAACAAACUGAGCUCCAGUUCCUGCGGACAAGAAUGACUUCCGCCAUUUCCUU ..........................(((((((((((.....((((((((((((((.......))))))))))).)))....))))))))(((((..((.....)))))))....))).. ( -28.70) >galGal2.chr2/39-158 UCUUUAUAGCUAAAGUACUUCCCCCUCAGGGAAUCAUACUGUCAUUUGUUUUUAUUUUCAAAAUGAAAACAAAUGGCAUUAUAACUCCUAAGGGUGAAAAUGACUUCAGUCUACUUUUU ......(((((.((((..(((.((((.((((....(((.(((((((((((((((((.....))))))))))))))))).)))...)))).)))).)))....)))).)).)))...... ( -36.00) >consensus ACUUUAUAACUAAAGUACUUUCCCCUCAAGGGAAUCAUACUGUCAUUUGUUUUUAUUUUCAAAAUGAAAACAAAUGGCACUAUAAUUCCUAAGGGCAAAAAUGACUUCAGUCUAUUUCUU .........((.((((..(((.(((....((((((((((.(((((((((((((((((.....))))))))))))))))).))))))))))..))).)))....)))).)).......... (-23.20 = -25.72 + 2.52)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
