Structure #178906
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr8 |
| Strand | + |
| Position | 60,104,198 - 60,104,317 |
| Number of sequences | 5 |
| Organisms | human, dog, mouse, rat, chicken |
| Mean pairwise identity | 77.19 |
| Columns | 120 |
| Mean single MFE | -24.32 |
| Consensus MFE | -13.44 |
| Combinations/base pair | 39 / 32 = 1.22 |
| SCI | 0.55 |
| z-score | -2.29 |
| RNA class probability | 0.965846 |
This structure is part of cluster 99450
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 5 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 77.19 Mean single sequence MFE: -24.32 Consensus MFE: -13.44 Energy contribution: -15.84 Covariance contribution: 2.40 Mean z-score: -2.29 Structure conservation index: 0.55 SVM decision value: 1.59 SVM RNA-class probability: 0.965846 Prediction: RNA ###################################################################### >hg17.chr8/60104198-60104317 UGUCAUUUGUUUUUAUUUUCAAAAUGAAAACAAAUGGCACUAUAAUUCCUAAGGGCAAAAAUGACUUCAGUCUAUUUCUUUUCCUAUACACUCUCAUUUAUUCAUUUUUAGUUAGAUGG (((((((((((((((((.....)))))))))))))))))............((((.(((((((((....))).)))).)).)))).........((((((............)))))). ( -24.90) >canFam1.chr29/12765111-12765231 UGUCAUUUGUUUUUAUUUUCAAAACGAAAACAAAUGGCACUAUGUUUCCUAAGGGCAAAAAUGACUUCAGUCUAUUUCUUUUCCUAUACACUCUCGUCUAUUUCAUUCGUAGUUCGAUGG (((((((((((((..((.....))..)))))))))))))............((((.(((((((((....))).)))).)).)))).....((.(((.((((.......))))..))).)) ( -23.10) >mm5.chr4/6840028-6840145 UGUCAUUUGUUUUUAUCUUUAAAAUGAAAACAAACUGAGCUCCAAUUCCUGAGGACAAGAACGACUUCUGCCAUUCUCUUCUCCAAAACUCUCAUAUAUUCAUCUUUGCUAAGAUGG .....(((((((((((.......))))))))))).((((...........(((((..((((....))))....)))))............))))......((((((....)))))). ( -19.60) >rn3.chr5/20521786-20521902 UGUCAUUUGUUUUUAUCUUUAAAAUGAAAACAAACUGAGCUCCAGUUCCUGCGGACAAGAAUGACUUCCGCCAUUUCCUUCCCAAAACUCUCAUAUGUUCCUCGUCGGUGAGAUGG .(((((((((((((((.......)))))))).(((((.....)))))...........))))))).....(((((((((..(...(((........)))....)..)).))))))) ( -22.30) >galGal2.chr2/78-195 UGUCAUUUGUUUUUAUUUUCAAAAUGAAAACAAAUGGCAUUAUAACUCCUAAGGGUGAAAAUGACUUCAGUCUACUUUUUUCUCUGCACUCCCAUCUACUCAUUUUAAGUUAGAUGG (((((((((((((((((.....)))))))))))))))))............((((.(((((.(((....)))...))))).))))......(((((((((.......)).))))))) ( -31.70) >consensus UGUCAUUUGUUUUUAUUUUCAAAAUGAAAACAAAUGGCACUAUAAUUCCUAAGGGCAAAAAUGACUUCAGUCUAUUUCUUUUCC__UACACUCUCAUAUA_UUCAUUUUUAGUUAGAUGG (((((((((((((((((.....))))))))))))))))).............(((.(((((.(((....)))...))))).)))...................((((........)))). (-13.44 = -15.84 + 2.40)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
