Structure #179365

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr8
Strand	+
Position	66,073,046 - 66,073,166
Number of sequences	4
Organisms	human, dog, mouse, rat
Mean pairwise identity	91.67
Columns	120
Mean single MFE	-26.47
Consensus MFE	-19.48
Combinations/base pair	34 / 32 = 1.06
SCI	0.74
z-score	-2.29
RNA class probability	0.715195

This structure is part of cluster 99719

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  91.67
 Mean single sequence MFE: -26.47
 Consensus MFE: -19.48
 Energy contribution: -20.04
 Covariance contribution:   0.56
 Mean z-score:  -2.29
 Structure conservation index:   0.74
 SVM decision value:   0.39
 SVM RNA-class probability: 0.715195
 Prediction: RNA

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>hg17.chr8/66073046-66073166
AGGGACGUAGAACCUGGUGUCAACUUCUUAGAAAUUUUUCUCCCCAACUAAUGCAACCCCAUUAAAAGUCCUCUUUUAGUGGGCACACAACCAAUAGUGCAUAUGCUGAUAGCAUUUUCA
.........(((..((.(((((.......((((....))))...........(((...((((((((((....))))))))))((((..........))))...)))))))).))..))). ( -26.80)
>canFam1.chr29/17773667-17773786
AGGGAUGUAAAACCUUGUCUAAAUUCUUAGAAAUUUUACUCCCCAACUAAUGCAACCCCAUUAAAAGUUCUUUUUUAGUGGGCACACAACCAAUACUGCAUAUGCUGAUGGCAUUUUCA
.((((.((((((.....(((((....)))))..)))))))))).....(((((...(((((((((((....)))))))))))...............((....)).....))))).... ( -28.80)
>mm5.chr3/18116006-18116126
AAGGAUGUAGAACAUGGUCUCAACUUCUUAGACAAUUUCCUCCCCAACUAAUGCAACCCCAUUAAAAGUUCUCUUUUAGUGGGCACACAACCAAUAGUGCAUAUGCUGAUAGCAUUUUCA
..((..(..(((....((((.........))))...)))..).))....(((((....((((((((((....))))))))))((((..........))))...........))))).... ( -24.50)
>rn3.chr2/103457865-103457985
AAGGAUGUAGAACAUCGUCUCAACUUCUUUGACAGUUUCCUCCCCAACUAAUGCAACCCCAUUAAAAGUUCUCUUUUAGUGGGCACACAACCAAUAGUGCAUAUGCCGAUAGCAUUUUCA
...((((.....))))(((...........)))((((........))))(((((....((((((((((....))))))))))((((..........))))...........))))).... ( -25.80)
>consensus
AAGGAUGUAGAACAUGGUCUCAACUUCUUAGAAAUUUUCCUCCCCAACUAAUGCAACCCCAUUAAAAGUUCUCUUUUAGUGGGCACACAACCAAUAGUGCAUAUGCUGAUAGCAUUUUCA
.((((.((.((........)).)).)))).((((................(((((..(((((((((((....)))))))))))..............)))))((((.....)))))))). (-19.48 = -20.04 +   0.56)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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