Structure #179367

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr8
Strand	+
Position	66,073,086 - 66,073,202
Number of sequences	4
Organisms	human, dog, mouse, rat
Mean pairwise identity	95.42
Columns	120
Mean single MFE	-23.42
Consensus MFE	-20.96
Combinations/base pair	25 / 24 = 1.04
SCI	0.89
z-score	-2.77
RNA class probability	0.971182

This structure is part of cluster 99719

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  95.42
 Mean single sequence MFE: -23.42
 Consensus MFE: -20.96
 Energy contribution: -21.02
 Covariance contribution:   0.06
 Mean z-score:  -2.77
 Structure conservation index:   0.89
 SVM decision value:   1.67
 SVM RNA-class probability: 0.971182
 Prediction: RNA

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>hg17.chr8/66073086-66073202
UCCCCAACUAAUGCAACCCCAUUAAAAGUCCUCUUUUAGUGGGCACACAACCAAUAGUGCAUAUGCUGAUAGCAUUUUCACAUACAAAUCUGAUAGGCACGCCAUUACCCAAUUUA
........((((((...(((((((((((....))))))))))).............((((.((((.(((........)))))))((....))....))))).)))))......... ( -24.40)
>canFam1.chr29/17773706-17773826
UCCCCAACUAAUGCAACCCCAUUAAAAGUUCUUUUUUAGUGGGCACACAACCAAUACUGCAUAUGCUGAUGGCAUUUUCACAUACAAAUCUGAUAGUUAGGCACGCCAUUACCCAAUUUA
..((.((((((((((..(((((((((((....)))))))))))..............)))))((((.....))))..................))))).))................... ( -21.29)
>mm5.chr3/18116046-18116166
UCCCCAACUAAUGCAACCCCAUUAAAAGUUCUCUUUUAGUGGGCACACAACCAAUAGUGCAUAUGCUGAUAGCAUUUUCACAUACAAAUCUGAUAGUUAGACACGCCAUUACCCAAUUUA
.......(((((.((..(((((((((((....))))))))))).............(((...((((.....))))...))).........))...))))).................... ( -24.30)
>rn3.chr2/103457905-103458025
UCCCCAACUAAUGCAACCCCAUUAAAAGUUCUCUUUUAGUGGGCACACAACCAAUAGUGCAUAUGCCGAUAGCAUUUUCACAUACAAAUCUGAUAGUUAAGCACGCCAUUACCCAAUUUA
........((((((...(((((((((((....))))))))))).............((((..((((.....))))..(((.((....)).))).......))))).)))))......... ( -23.70)
>consensus
UCCCCAACUAAUGCAACCCCAUUAAAAGUUCUCUUUUAGUGGGCACACAACCAAUAGUGCAUAUGCUGAUAGCAUUUUCACAUACAAAUCUGAUAGUUAGGCACGCCAUUACCCAAUUUA
........((((((...(((((((((((....))))))))))).............(((...((((.....))))...))).......................).)))))......... (-20.96 = -21.02 +   0.06)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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