Structure #179375

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr8
Strand	+
Position	66,073,166 - 66,073,274
Number of sequences	4
Organisms	human, dog, mouse, rat
Mean pairwise identity	88.97
Columns	120
Mean single MFE	-33.62
Consensus MFE	-21.9
Combinations/base pair	28 / 25 = 1.12
SCI	0.65
z-score	-2.28
RNA class probability	0.586452

This structure is part of cluster 99719

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  88.97
 Mean single sequence MFE: -33.62
 Consensus MFE: -21.90
 Energy contribution: -22.34
 Covariance contribution:   0.44
 Mean z-score:  -2.28
 Structure conservation index:   0.65
 SVM decision value:   0.11
 SVM RNA-class probability: 0.586452
 Prediction: RNA

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>hg17.chr8/66073166-66073274
CAUACAAAUCUGAUAGGCACGCCAUUACCCAAUUUACACAUGCAAAUGCAGUAAUUGUGUGUACUGGGUGCUGGGGAAACCUGGCAUACACCCAAAAUGGAGGCCUUU
..............((((...((((((((((...(((((((((....))).....))))))...)))))((..((....))..))..........)))))..)))).. ( -39.10)
>canFam1.chr29/17773786-17773899
CAUACAAAUCUGAUAGUUAGGCACGCCAUUACCCAAUUUACACAUGCAAAUGCAGUAAUUGUGUGCACUGGGUGCUCAGGGAAACCUGGCACACGCCCAAAAUGGAGGCCUUU
..................((((...(((((..(((.(.(((((((((....))).....)))))).).)))((((.((((....))))))))........)))))..)))).. ( -37.90)
>mm5.chr3/18116126-18116239
CAUACAAAUCUGAUAGUUAGACACGCCAUUACCCAAUUUACACAUGCAAAUGCUGUAAUUGUGUGUACUGGGGGUUCCUGGAAACCUGGCACACACCCAAAAUGGAGGCCUUU
........(((((...)))))...(((..........((((((((....))).)))))..((((((.(..((..((....))..))..).))))))((.....)).))).... ( -27.20)
>rn3.chr2/103457985-103458104
CAUACAAAUCUGAUAGUUAAGCACGCCAUUACCCAAUUUACACAUGCAAAUGCAGUAAUUGUGUGUACUGGGGGUGGGGGGUUCCUGAAACCUGGCACACAUCCAAAAUGGAGGCCUUU
.......................(.(((((.((((...(((((((((....))).....))))))...))))))))).)((((.....)))).(((.....(((.....))).)))... ( -30.30)
>consensus
CAUACAAAUCUGAUAGUUAGGCACGCCAUUACCCAAUUUACACAUGCAAAUGCAGUAAUUGUGUGUACUGGGGGCU_GGG_______GAAACCUGGCACACACCCAAAAUGGAGGCCUUU
..................((((...(((((.......((((...(((....)))))))..((((((.(..((...................))..).))))))....)))))..)))).. (-21.90 = -22.34 +   0.44)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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