Structure #179380
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr8 |
| Strand | + |
| Position | 66,073,202 - 66,073,314 |
| Number of sequences | 4 |
| Organisms | human, dog, mouse, rat |
| Mean pairwise identity | 88.25 |
| Columns | 120 |
| Mean single MFE | -32.23 |
| Consensus MFE | -21.61 |
| Combinations/base pair | 25 / 21 = 1.19 |
| SCI | 0.67 |
| z-score | -1.62 |
| RNA class probability | 0.502054 |
This structure is part of cluster 99719
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 4 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 88.25 Mean single sequence MFE: -32.23 Consensus MFE: -21.61 Energy contribution: -21.36 Covariance contribution: -0.25 Mean z-score: -1.62 Structure conservation index: 0.67 SVM decision value: -0.06 SVM RNA-class probability: 0.502054 Prediction: RNA ###################################################################### >hg17.chr8/66073202-66073314 CACAUGCAAAUGCAGUAAUUGUGUGUACUGGGUGCUGGGGAAACCUGGCAUACACCCAAAAUGGAGGCCUUUUCAAAGCGUGGCCAACCCACCAAAUUCCUCUUCCUCAGCA .((((((((.........))))))))..(((((((..((....))..))......((.....)).((((............)))).)))))..................... ( -32.30) >canFam1.chr29/17773826-17773939 CACAUGCAAAUGCAGUAAUUGUGUGCACUGGGUGCUCAGGGAAACCUGGCACACGCCCAAAAUGGAGGCCUUUUCAAAGCAUGGCCAACCCACCAAAUUCUUUUUCCACAACA .((.(((....)))))..(((((.....((((((.(((((....)))))....))))))...(((.((((............))))...)))..............))))).. ( -32.70) >mm5.chr3/18116166-18116279 CACAUGCAAAUGCUGUAAUUGUGUGUACUGGGGGUUCCUGGAAACCUGGCACACACCCAAAAUGGAGGCCUUUUCAAAGCAUGGCCAACCCACUAAAUUCCUUUUCCACAGCA ..........((((((....((((((.(..((..((....))..))..).))))))......(((.((((............))))...)))...............)))))) ( -32.40) >rn3.chr2/103458025-103458144 CACAUGCAAAUGCAGUAAUUGUGUGUACUGGGGGUGGGGGGUUCCUGAAACCUGGCACACAUCCAAAAUGGAGGCCUUUUCAAAGCAUGGCCAAACCACUAAAUUCCUCUUCCACAGCA .((((((((.........)))))))).(((.(((.((((((((..(((((...(((.....(((.....))).))).))))).....(((.....)))...)))))))).))).))).. ( -31.50) >consensus CACAUGCAAAUGCAGUAAUUGUGUGUACUGGGGGCU_GGG_______GAAACCUGGCACACACCCAAAAUGGAGGCCUUUUCAAAGCAUGGCCAACCCACCAAAUUCCUCUUCCACAGCA ....(((....)))((....((((((.(..((...................))..).))))))......(((.((((............))))...)))..................)). (-21.61 = -21.36 + -0.25)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
