Structure #181088
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr8 |
| Strand | + |
| Position | 95,518,349 - 95,518,455 |
| Number of sequences | 6 |
| Organisms | human, dog, mouse, rat, chicken, zebrafish, fugu |
| Mean pairwise identity | 80.88 |
| Columns | 120 |
| Mean single MFE | -36.57 |
| Consensus MFE | -25.15 |
| Combinations/base pair | 31 / 25 = 1.24 |
| SCI | 0.69 |
| z-score | -2.46 |
| RNA class probability | 0.911122 |
This structure is part of cluster 100748
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 6 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 80.88 Mean single sequence MFE: -36.57 Consensus MFE: -25.15 Energy contribution: -25.10 Covariance contribution: -0.05 Mean z-score: -2.46 Structure conservation index: 0.69 SVM decision value: 1.08 SVM RNA-class probability: 0.911122 Prediction: RNA ###################################################################### >hg17.chr8/95518349-95518455 AAAAAGAUCAGGCUUAACUAGGCUAGCCUCAUUUAGGCCCACGCCUACAGGGGAGGGUUUAUUAAAAUUCCUCCAGCUUAAGCUGACGCAGGUUCAGGAAAUCUG .......((((.(((((.(((((..((((.....))))....)))))....((((((...........))))))...)))))))))..((((((.....)))))) ( -29.20) >mm5.chr4/142635473-142635365 AAAGAUCAGGCUUAACUAGGCUAGCCUCAUUUAGGCCCACGCCUACAGGGGAGGGCUUAUUAAAAUUCCUCCAGCUUAAGCUGACUUACGCAGGUUCAGGAAAGCCG ........(((((..((..(((.((......(((((((.(.((....)).).)))))))............((((....))))......)).)))..))..))))). ( -37.10) >rn3.chr5/147255618-147255512 AGAAAGAUCAGGCUUAACUAGGCUAGCCUCAUUUAGGCCCACGCCUACAGGGGAGGGCUUAUUAAAAUUCCUGCAGCUUAAGCUGACGCAGGUUCGGGAAAGCUG ..........(((((..(((((((..((((...(((((....)))))..))))..))))).........((((((((....)))...)))))...))..))))). ( -34.60) >galGal2.chr2/67-173 AAAAAGAUCAGGCUUAACUAGGCUAGUCUCAUUUAGGCCCACGCCUACAAGGGAGGGUUUAUUAAAAUUCCUUCAGCUUAAGCUGACGCAGGUUCAGGAAAUCUG ....((((.((.((.....)).)).))))....(((((((...(((....))).)))))))......((((((((((....))))).........)))))..... ( -25.70) >danRer1.chr16/16286805-16286689 ACGUAAGAAAAAGAAUCAGGCUUAACUAGGCCAGCCUCGAUUAGGCCCACGCCUACCCGGGGAGGGCUUUGCUGGAAUUCCUUUUAGCUUAAGCUGACGCAGGUUCAGUAAAGCUG .(....)...........(((((....)))))..(((((..(((((....)))))..)))))..((((((((((((...(((.(((((....)))))...))))))))))))))). ( -42.90) >fr1.chrUn/62237609-62237711 AUAAGAAUCAGGCUUAACUAGGCCAGCCUCGCUUAGGCCCCCGCCUACCGCGGAGGGCUUCGGAUGAAUUCCUCCCAGCUUAGGCUGACGUAGUUAAGCCG ..........((((((((((.(.((((((.(((.((((((((((.....)))).)))))).(((.....)))....)))..)))))).).)))))))))). ( -49.90) >consensus ________AAAAAGAUCAGGCUUAACUAGGCUAGCCUCAUUUAGGCCCACGCCUA_CAGGGGAGGGCUU__AUUAAAAUUCCUCCAGCUUAAGCUG____ACGCAGGUUCAGGAAAGCUG ..................(((((..(((((((..((((...(((((....)))))...))))..)))))...............((((....))))..............))..))))). (-25.15 = -25.10 + -0.05)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
