Structure #181092
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr8 |
| Strand | + |
| Position | 95,518,382 - 95,518,488 |
| Number of sequences | 6 |
| Organisms | human, dog, mouse, rat, chicken, zebrafish, fugu |
| Mean pairwise identity | 80.04 |
| Columns | 120 |
| Mean single MFE | -33.22 |
| Consensus MFE | -24.77 |
| Combinations/base pair | 35 / 28 = 1.25 |
| SCI | 0.75 |
| z-score | -1.65 |
| RNA class probability | 0.833931 |
This structure is part of cluster 100748
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 6 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 80.04 Mean single sequence MFE: -33.22 Consensus MFE: -24.77 Energy contribution: -24.97 Covariance contribution: 0.20 Mean z-score: -1.65 Structure conservation index: 0.75 SVM decision value: 0.73 SVM RNA-class probability: 0.833931 Prediction: RNA ###################################################################### >hg17.chr8/95518382-95518488 UUAGGCCCACGCCUACAGGGGAGGGUUUAUUAAAAUUCCUCCAGCUUAAGCUGACGCAGGUUCAGGAAAUCUGCUUAAGCCAAGCCUGACCUACAUAAAGCUUCUC .(((((....))))).(((((((((...........)))))).((((..(((...(((((((.....)))))))...))).))))....))).............. ( -31.70) >mm5.chr4/142635510-142635396 UUAGGCCCACGCCUACAGGGGAGGGCUUAUUAAAAUUCCUCCAGCUUAAGCUGACUUACGCAGGUUCAGGAAAGCCGCUUAAGCCAAGCCUGACCUACAUAAAGCUAGCUUCUC .(((((....)))))(((((((((..((.....))..))))).((((((((.(((((....)))))..((....))))))))))....))))...................... ( -33.70) >rn3.chr5/147255651-147255545 UUAGGCCCACGCCUACAGGGGAGGGCUUAUUAAAAUUCCUGCAGCUUAAGCUGACGCAGGUUCGGGAAAGCUGCUUAAGCCAAGCCUGACCUACAUAAAGCUUCUC .(((((((.(.((....)).).)))))))...........(.(((((..((....))((((.((((...(((.....)))....)))))))).....))))).).. ( -33.80) >galGal2.chr2/100-206 UUAGGCCCACGCCUACAAGGGAGGGUUUAUUAAAAUUCCUUCAGCUUAAGCUGACGCAGGUUCAGGAAAUCUGCUUAAGCCAAGCCUGACCUACAUAAGGCUUCAG .(((((....)))))........((((((...........(((((....))))).(((((((.....))))))).))))))((((((..........))))))... ( -32.00) >danRer1.chr16/16286838-16286729 UUAGGCCCACGCCUACCCGGGGAGGGCUUUGCUGGAAUUCCUUUUAGCUUAAGCUGACGCAGGUUCAGUAAAGCUGCUUAAGCCUGGCCUGACCUACAUAACAAACCCG (((((((....(((....)))(((((((((((((((...(((.(((((....)))))...))))))))))))))).)))......)))))))................. ( -35.30) >fr1.chrUn/62237642-62237747 UUAGGCCCCCGCCUACCGCGGAGGGCUUCGGAUGAAUUCCUCCCAGCUUAGGCUGACGUAGUUAAGCCGCUUAAACCCAGCCCGACCUACUUACAGCCCGGUCUC ..(((((.((((.....)))).(((((..(((.....)))....((.(..(((((......(((((...)))))...)))))..).))......)))))))))). ( -32.80) >consensus UUAGGCCCACGCCUA_CAGGGGAGGGCUU__AUUAAAAUUCCUCCAGCUUAAGCUG____ACGCAGGUUCAGGAAAGCUGCUUAAGCCAAGCCUGACCUACAUAA____AGCU___UCUC .(((((....)))))...(((..((((((...((((........((((....))))......((((.((.....)).))))))))...))))))..)))..................... (-24.77 = -24.97 + 0.20)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
