Structure #181094

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr8
Strand	-
Position	95,518,382 - 95,518,488
Number of sequences	6
Organisms	human, dog, mouse, rat, chicken, zebrafish, fugu
Mean pairwise identity	80.04
Columns	120
Mean single MFE	-37.45
Consensus MFE	-22.5
Combinations/base pair	31 / 27 = 1.15
SCI	0.6
z-score	-1.74
RNA class probability	0.643546

This structure is part of cluster 100748

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 6
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  80.04
 Mean single sequence MFE: -37.45
 Consensus MFE: -22.50
 Energy contribution: -24.20
 Covariance contribution:   1.70
 Mean z-score:  -1.74
 Structure conservation index:   0.60
 SVM decision value:   0.22
 SVM RNA-class probability: 0.643546
 Prediction: RNA

######################################################################

>hg17.chr8/95518488-95518382
GAGAAGCUUUAUGUAGGUCAGGCUUGGCUUAAGCAGAUUUCCUGAACCUGCGUCAGCUUAAGCUGGAGGAAUUUUAAUAAACCCUCCCCUGUAGGCGUGGGCCUAA
...(((((..((((((((((((....((....))......)))).)))))))).))))).....(((((.............)))))....(((((....))))). ( -35.72)
>mm5.chr4/142635396-142635510
GAGAAGCUAGCUUUAUGUAGGUCAGGCUUGGCUUAAGCGGCUUUCCUGAACCUGCGUAAGUCAGCUUAAGCUGGAGGAAUUUUAAUAAGCCCUCCCCUGUAGGCGUGGGCCUAA
...(((((..(((.((((((((((((...((((.....))))..)))).)))))))))))..))))).....(((((..((.....))..)))))....(((((....))))). ( -44.40)
>rn3.chr5/147255545-147255651
GAGAAGCUUUAUGUAGGUCAGGCUUGGCUUAAGCAGCUUUCCCGAACCUGCGUCAGCUUAAGCUGCAGGAAUUUUAAUAAGCCCUCCCCUGUAGGCGUGGGCCUAA
...(((((..((((((((..((...((((.....))))...))..)))))))).))))).....................((((.(.((....)).).)))).... ( -32.30)
>galGal2.chr2/206-100
CUGAAGCCUUAUGUAGGUCAGGCUUGGCUUAAGCAGAUUUCCUGAACCUGCGUCAGCUUAAGCUGAAGGAAUUUUAAUAAACCCUCCCUUGUAGGCGUGGGCCUAA
......((((((((((((((((....((....))......)))).))))))))((((....))))))))............(((.(((.....)).).)))..... ( -32.10)
>danRer1.chr16/16286729-16286838
CGGGUUUGUUAUGUAGGUCAGGCCAGGCUUAAGCAGCUUUACUGAACCUGCGUCAGCUUAAGCUAAAAGGAAUUCCAGCAAAGCCCUCCCCGGGUAGGCGUGGGCCUAA
.((((((((((((((((((((...(((((.....)))))..))).)))))))).)))....(((....((....))))).))))))........(((((....))))). ( -37.00)
>fr1.chrUn/62237747-62237642
GAGACCGGGCUGUAAGUAGGUCGGGCUGGGUUUAAGCGGCUUAACUACGUCAGCCUAAGCUGGGAGGAAUUCAUCCGAAGCCCUCCGCGGUAGGCGGGGGCCUAA
......((((((...((((.(..(((((........)))))..)))))..))))))..(((((((((..(((....)))..))))).))))((((....)))).. ( -43.20)
>consensus
GAGA___AGCU____UUAUGUAGGUCAGGCUUGGCUUAAGCAGCUUUCCUGAACCUGCGU____CAGCUUAAGCUGGAGGAAUUUUAAU__AAGCCCUCCCCUG_UAGGCGUGGGCCUAA
.................((((((((((((...((((.....))))..)))).))))))))....((((....)))).................((((.(.((.....)).).)))).... (-22.50 = -24.20 +   1.70) 

	

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Consensus structure

Secondary structure graph

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Montain plot

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Dotplot

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