Structure #181098
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr8 |
| Strand | - |
| Position | 95,518,419 - 95,518,527 |
| Number of sequences | 6 |
| Organisms | human, dog, mouse, rat, chicken, zebrafish, fugu |
| Mean pairwise identity | 71.01 |
| Columns | 120 |
| Mean single MFE | -36.17 |
| Consensus MFE | -15.28 |
| Combinations/base pair | 23 / 20 = 1.15 |
| SCI | 0.42 |
| z-score | -2.2 |
| RNA class probability | 0.95883 |
This structure is part of cluster 100748
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 6 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 71.01 Mean single sequence MFE: -36.17 Consensus MFE: -15.28 Energy contribution: -16.62 Covariance contribution: 1.33 Mean z-score: -2.20 Structure conservation index: 0.42 SVM decision value: 1.48 SVM RNA-class probability: 0.958830 Prediction: RNA ###################################################################### >hg17.chr8/95518527-95518419 ACAAGUGUGUUUUGCUUGUGCCUUCCUGUCUUCUUCAGUGAGAAGCUUUAUGUAGGUCAGGCUUGGCUUAAGCAGAUUUCCUGAACCUGCGUCAGCUUAAGCUGGAGG (((((((.....))))))).............(((((((...(((((..((((((((((((....((....))......)))).)))))))).)))))..))))))). ( -38.60) >mm5.chr4/142635433-142635546 ACAAGUGUGUUUUGCUUGUGCUCUCCUGCCUUCUGUGAGAAGCUAGCUUUAUGUAGGUCAGGCUUGGCUUAAGCGGCUUUCCUGAACCUGCGUAAGUCAGCUUAAGCUGGAGG (((((((.....))))))).........(((((.((...(((((..(((.((((((((((((...((((.....))))..)))).)))))))))))..)))))..)).))))) ( -44.00) >rn3.chr5/147255582-147255685 ACAAGUGUGUUUGCGUGUGCUUUCCUGUCUCUGUGAGAAGCUUUAUGUAGGUCAGGCUUGGCUUAAGCAGCUUUCCCGAACCUGCGUCAGCUUAAGCUGCAGG .(((((.((((((((((.((((..(.........)..))))..)))))))).)).)))))((((((((.((............))....))))))))...... ( -31.80) >galGal2.chr2/245-137 AAAAGUGUAUUUCGCUUGUUUCUUCUCGUCUUCUUCAGUCUGAAGCCUUAUGUAGGUCAGGCUUGGCUUAAGCAGAUUUCCUGAACCUGCGUCAGCUUAAGCUGAAGG ..(((((.....)))))...............((((((.((.((((...((((((((((((....((....))......)))).))))))))..)))).)))))))). ( -34.80) >danRer1.chr16/16286769-16286873 ACAACAGAGCUCCGCUGUUUCUAGACUAAUGUAGUCGGGUUUGUUAUGUAGGUCAGGCCAGGCUUAAGCAGCUUUACUGAACCUGCGUCAGCUUAAGCUAAAAG .......((((..((((......(((((...))))).........(((((((((((...(((((.....)))))..))).))))))))))))...))))..... ( -29.90) >fr1.chrUn/62237785-62237681 AGCAGGAUGUGGUCUCUGUGCUUGGUUUGGGUUUUAGAGAGACCGGGCUGUAAGUAGGUCGGGCUGGGUUUAAGCGGCUUAACUACGUCAGCCUAAGCUGGGAG (((.......(((((((.(((((.....))))...).)))))))((((((...((((.(..(((((........)))))..)))))..))))))..)))..... ( -37.90) >consensus ACAAGUGUGUUUUGCUUGUGCUUU_CCUGUCUUCU__AGUGAGA___AGCU____UUAUGUAGGUCAGGCUUGGCUUAAGCAGCUUUCCUGAACCUGCGU____CAGCUUAAGCUGGAGG .........................................................((((((((((((...((((.....))))..)))).))))))))....((((....)))).... (-15.28 = -16.62 + 1.33)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
