Structure #181889

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr8
Strand	+
Position	107,819,050 - 107,819,116
Number of sequences	5
Organisms	human, dog, mouse, rat, chicken
Mean pairwise identity	74.72
Columns	74
Mean single MFE	-24.86
Consensus MFE	-19.4
Combinations/base pair	31 / 22 = 1.41
SCI	0.78
z-score	-5.64
RNA class probability	0.995656

This structure is part of cluster 101221

Alignment

[Download Clustal]

RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 5
 Slice: 1 to 74
 Columns: 74
 Strand: +
 Mean pairwise identity:  74.72
 Mean single sequence MFE: -24.86
 Consensus MFE: -19.40
 Energy contribution: -18.60
 Covariance contribution:  -0.80
 Mean z-score:  -5.64
 Structure conservation index:   0.78
 SVM decision value:   2.60
 SVM RNA-class probability: 0.995656
 Prediction: RNA

######################################################################

>hg17.chr8/107819050-107819116
UGUUUUUAGUGUUCUUUGUCAUGGCAAAUCUCAUUUGAAGAAUUUGCUUUGACUGCAGCACUAAAA
...(((((((((((...((((.((((((((((....).)).))))))).)))).).)))))))))) ( -21.50)
>canFam1.chr13/10578419-10578487
UGUUUUUAGUGUCUCUCGUCAGGGCAAAUCUCAUUUUUAAAGGAUUUGUCUUGACUGCAGCACUAAAA
...(((((((((..(..((((((((((((((..........)))))))))))))).)..))))))))) ( -26.00)
>mm5.chr15/41823089-41823157
UGUUUUUAGUGUCCUUUCUCAAGACAAAUCUCACAUUAGAAGGAUUUGCCUUGAAUGAAACACUAAAA
...(((((((((..((..(((((.(((((((..(....)..))))))).)))))..)).))))))))) ( -19.40)
>rn3.chr7/77510991-77511059
UGUUUUUAGUGUCCUUUCUCAAGACAAAUCUUACGUUAAAAGGAUUUGUCUUGAAUGAAGCACUAAAA
...(((((((((..((..((((((((((((((........))))))))))))))..)).))))))))) ( -26.00)
>galGal2.chr2/129925776-129925848
UUUGUAGUGUCUUUGAUCAGGGCAAGUCCCACUCUUAAGGUGGGUUUGUCUUGUCUACAAACAACACUACAA
.(((((((((.((((..(((((((((.((((((.....)))))))))))))))....))))..))))))))) ( -31.40)
>consensus
UGUUUUUAGUGUCCUUUCUCAAGGCAAAUCUCACAUUUAAA__GGAUUUGUCUUGACU____GCAGCACUAAAA
...(((((((((......(((((((((((((............))))))))))))).........))))))))) (-19.40 = -18.60 +  -0.80) 

	

[Download RNAz result]

Consensus structure

Secondary structure graph

[PS | PDF]

Montain plot

[PS | PDF]

Dotplot

[PS | PDF]