Structure #181890

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr8
Strand	-
Position	107,819,050 - 107,819,116
Number of sequences	5
Organisms	human, dog, mouse, rat, chicken
Mean pairwise identity	74.72
Columns	74
Mean single MFE	-22.18
Consensus MFE	-13.54
Combinations/base pair	26 / 20 = 1.30
SCI	0.61
z-score	-5.08
RNA class probability	0.999672

This structure is part of cluster 101221

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 5
 Slice: 1 to 74
 Columns: 74
 Strand: +
 Mean pairwise identity:  74.72
 Mean single sequence MFE: -22.18
 Consensus MFE: -13.54
 Energy contribution: -13.54
 Covariance contribution:   0.00
 Mean z-score:  -5.08
 Structure conservation index:   0.61
 SVM decision value:   3.87
 SVM RNA-class probability: 0.999672
 Prediction: RNA

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>hg17.chr8/107819116-107819050
UUUUAGUGCUGCAGUCAAAGCAAAUUCUUCAAAUGAGAUUUGCCAUGACAAAGAACACUAAAAACA
((((((((((...((((..((((((.(((.....)))))))))..))))..))..))))))))... ( -17.70)
>canFam1.chr13/10578487-10578419
UUUUAGUGCUGCAGUCAAGACAAAUCCUUUAAAAAUGAGAUUUGCCCUGACGAGAGACACUAAAAACA
((((((((((...((((.(.(((((((.........).)))))).).))))...)).))))))))... ( -18.50)
>mm5.chr15/41823157-41823089
UUUUAGUGUUUCAUUCAAGGCAAAUCCUUCUAAUGUGAGAUUUGUCUUGAGAAAGGACACUAAAAACA
(((((((((((..(((((((((((((..((......)))))))))))))))...)))))))))))... ( -26.20)
>rn3.chr7/77511059-77510991
UUUUAGUGCUUCAUUCAAGACAAAUCCUUUUAACGUAAGAUUUGUCUUGAGAAAGGACACUAAAAACA
(((((((((((..(((((((((((((............)))))))))))))..))).))))))))... ( -25.10)
>galGal2.chr2/129925848-129925776
UUGUAGUGUUGUUUGUAGACAAGACAAACCCACCUUAAGAGUGGGACUUGCCCUGAUCAAAGACACUACAAA
((((((((((.....(((.((((.....((((((....).))))).))))..)))......)))))))))). ( -23.40)
>consensus
UUUUAGUGCUGC____AGUCAAGACAAAUCC__UUUAAAAGUGAGAUUUGCCCUGACAAAGGACACUAAAAACA
((((((((.........((((.((((((((..............)))))))).))))......))))))))... (-13.54 = -13.54 +   0.00)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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