Structure #182377
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr8 |
| Strand | + |
| Position | 117,112,739 - 117,112,851 |
| Number of sequences | 5 |
| Organisms | human, mouse, rat, dog, chicken |
| Mean pairwise identity | 76.58 |
| Columns | 120 |
| Mean single MFE | -29.36 |
| Consensus MFE | -16.88 |
| Combinations/base pair | 32 / 22 = 1.45 |
| SCI | 0.57 |
| z-score | -2.91 |
| RNA class probability | 0.998701 |
This structure is part of cluster 101497
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 5 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 76.58 Mean single sequence MFE: -29.36 Consensus MFE: -16.88 Energy contribution: -15.36 Covariance contribution: -1.52 Mean z-score: -2.91 Structure conservation index: 0.57 SVM decision value: 3.19 SVM RNA-class probability: 0.998701 Prediction: RNA ###################################################################### >hg17.chr8/117112739-117112851 AGUCUCGUAUCUUCUAUGUAGAUGAACUGCCUGCAUUUCAAUUUAAAGUAAUGAUGUGAACAAUUUCACUUCAUUACUUCCAGCUCUAGCUUCAUAGUGUCUAUGUUAAUGC .....((((....(((((.((.((((.((....)).)))).....(((((((((.(((((....))))).)))))))))..........)).)))))....))))....... ( -24.00) >mm5.chr15/51241274-51241390 AGUCUCAUGACUUCUGUGCAGAGGAGCCUCUCGCAUUUCAAUUUAAAGUAAUGGUGUGAGCAAUUUCACUCCAUUACUUCUGUCUCCAAUAGGGUUCACAGCAUCCAUGCUAAUGU ((((....))))...((((((((....)))).)))).........(((((((((.(((((....))))).))))))))).((..(((....)))..)).((((....))))..... ( -32.50) >rn3.chr7/87436965-87437080 AGUCUCAUGACUUCUGUGCCGACGAGCCUCUCGCAUUUCAAUUUAAAGUAAUGGUGUGAGCAAUUUCACUCCAUUACUUCUGUCUCCAAUAGGUUCACAGCAUCCAUGUUAAUGU .....((((....((((((((.((((...)))))...........(((((((((.(((((....))))).)))))))))............))..)))))....))))....... ( -28.80) >canFam1.chr13/18636106-18636221 AGUCUCAUGACUUCUAUGCAGAUGAACUGUCUGCAUUUCAAUUUAAAGUAAUGAUGUGAGCAAUUUCAUGUCAUUACUUCCAGCUUCAAUAUGUUCAUGGUGUCCAUGUUAAUGC ((((....))))...((((((((.....)))))))).........(((((((((((((((....)))))))))))))))...((...((((((..(.....)..))))))...)) ( -32.30) >galGal2.chr2/13522194-13522075 AGCCUCAAGAAGCCUUCAGUGCAGACAGCACAUACCCAAUUUUCAUCUAAAGUAAUGUUGUGAGCAAUCUCACACCAUUACUCCCAACUCCAAUAAGUUCAUUGUGUCUGCAUUACUGC .................((((((((((.((....................(((((((.((((((....)))))).)))))))...((((......))))...))))))))))))..... ( -29.20) >consensus AGUCUCAUGA___CUUCUGUGCAGAC_GAACCUCCCGCAUUUCAAUUUAAAGUAAUGAUGUGAGCAAUUUCACUCCAUUACUUCCAGCUCCAAUA_GGUUCAUAGUGUCCAUGUUAAUGC ................(((((......(((..........)))......(((((((((.(((((....))))).))))))))).................)))))............... (-16.88 = -15.36 + -1.52)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
