Structure #182378
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr8 |
| Strand | - |
| Position | 117,112,739 - 117,112,851 |
| Number of sequences | 5 |
| Organisms | human, mouse, rat, dog, chicken |
| Mean pairwise identity | 76.58 |
| Columns | 120 |
| Mean single MFE | -33.98 |
| Consensus MFE | -18.86 |
| Combinations/base pair | 36 / 26 = 1.38 |
| SCI | 0.56 |
| z-score | -3.25 |
| RNA class probability | 0.999594 |
This structure is part of cluster 101497
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 5 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 76.58 Mean single sequence MFE: -33.98 Consensus MFE: -18.86 Energy contribution: -18.26 Covariance contribution: -0.60 Mean z-score: -3.25 Structure conservation index: 0.56 SVM decision value: 3.76 SVM RNA-class probability: 0.999594 Prediction: RNA ###################################################################### >hg17.chr8/117112851-117112739 GCAUUAACAUAGACACUAUGAAGCUAGAGCUGGAAGUAAUGAAGUGAAAUUGUUCACAUCAUUACUUUAAAUUGAAAUGCAGGCAGUUCAUCUACAUAGAAGAUACGAGACU ...............(((((.((...((((((((((((((((.(((((....))))).))))))))))...(((.....))).))))))..)).)))))............. ( -28.60) >mm5.chr15/51241390-51241274 ACAUUAGCAUGGAUGCUGUGAACCCUAUUGGAGACAGAAGUAAUGGAGUGAAAUUGCUCACACCAUUACUUUAAAUUGAAAUGCGAGAGGCUCCUCUGCACAGAAGUCAUGAGACU .......(((((...(((((........((....))((((((((((.((((......)))).)))))))))).............((((....)))).)))))...)))))..... ( -36.40) >rn3.chr7/87437080-87436965 ACAUUAACAUGGAUGCUGUGAACCUAUUGGAGACAGAAGUAAUGGAGUGAAAUUGCUCACACCAUUACUUUAAAUUGAAAUGCGAGAGGCUCGUCGGCACAGAAGUCAUGAGACU .......(((((...(((((..((...((....))((((((((((.((((......)))).))))))))))..........(((((...))))).)))))))...)))))..... ( -36.40) >canFam1.chr13/18636221-18636106 GCAUUAACAUGGACACCAUGAACAUAUUGAAGCUGGAAGUAAUGACAUGAAAUUGCUCACAUCAUUACUUUAAAUUGAAAUGCAGACAGUUCAUCUGCAUAGAAGUCAUGAGACU ((.((((.(((..(.....)..))).)))).))..((((((((((..(((......)))..))))))))))........(((((((.......)))))))...((((....)))) ( -27.40) >galGal2.chr2/13522075-13522194 GCAGUAAUGCAGACACAAUGAACUUAUUGGAGUUGGGAGUAAUGGUGUGAGAUUGCUCACAACAUUACUUUAGAUGAAAAUUGGGUAUGUGCUGUCUGCACUGAAGGCUUCUUGAGGCU .((((...(((((((((.....((.(((...(((..((((((((.((((((....)))))).))))))))..)))...))).)).....)).)))))))))))..(((((....))))) ( -41.10) >consensus GCAUUAACAUGGACACUAUGAACC_UAUUGGAGAUGGAAGUAAUGGAGUGAAAUUGCUCACACCAUUACUUUAAAUUGAAAUGCGGGAAGUUC_AUCUGCACAGAAG___UCAUGAGACU .......(((((...(((((........((....))((((((((((.((((......)))).))))))))))...........................)))))......)))))..... (-18.86 = -18.26 + -0.60)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
