Structure #182379
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr8 |
| Strand | + |
| Position | 117,112,775 - 117,112,882 |
| Number of sequences | 5 |
| Organisms | human, mouse, rat, dog, chicken |
| Mean pairwise identity | 76.84 |
| Columns | 120 |
| Mean single MFE | -25.72 |
| Consensus MFE | -15.75 |
| Combinations/base pair | 36 / 26 = 1.38 |
| SCI | 0.61 |
| z-score | -3.02 |
| RNA class probability | 0.999128 |
This structure is part of cluster 101497
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 5 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 76.84 Mean single sequence MFE: -25.72 Consensus MFE: -15.75 Energy contribution: -15.79 Covariance contribution: 0.04 Mean z-score: -3.02 Structure conservation index: 0.61 SVM decision value: 3.39 SVM RNA-class probability: 0.999128 Prediction: RNA ###################################################################### >hg17.chr8/117112775-117112882 UUCAAUUUAAAGUAAUGAUGUGAACAAUUUCACUUCAUUACUUCCAGCUCUAGCUUCAUAGUGUCUAUGUUAAUGCCUACCAAUGAAACAUGAAAAGAACAAAGACU .........(((((((((.(((((....))))).)))))))))..(((....))).......((((.((((.(((.............)))......)))).)))). ( -20.52) >mm5.chr15/51241310-51241421 UUCAAUUUAAAGUAAUGGUGUGAGCAAUUUCACUCCAUUACUUCUGUCUCCAAUAGGGUUCACAGCAUCCAUGCUAAUGUCUACCGACAAAACAUGAGAAGAACAAUGGCU .........(((((((((.(((((....))))).)))))))))..(((.((....))((((..((((....))))..((((....))))...........))))...))). ( -28.80) >rn3.chr7/87437001-87437111 UUCAAUUUAAAGUAAUGGUGUGAGCAAUUUCACUCCAUUACUUCUGUCUCCAAUAGGUUCACAGCAUCCAUGUUAAUGUCUACCGACAAAACAUGAAAAGAACAAUGGCU (((......(((((((((.(((((....))))).)))))))))((((..((....))...))))....((((((..((((....)))).))))))....)))........ ( -28.40) >canFam1.chr13/18636142-18636252 UUCAAUUUAAAGUAAUGAUGUGAGCAAUUUCAUGUCAUUACUUCCAGCUUCAAUAUGUUCAUGGUGUCCAUGUUAAUGCCUACCAACAAAACAUGAAAAGAACAAAAGCU .........(((((((((((((((....)))))))))))))))..(((((.....(((((.(((((..(((....)))..))))).((.....))....))))).))))) ( -27.90) >galGal2.chr2/13522234-13522115 UUUCAUCUAAAGUAAUGUUGUGAGCAAUCUCACACCAUUACUCCCAACUCCAAUAAGUUCAUUGUGUCUGCAUUACUGCCUACAAGCUACACACACAAAAGGAGAAACUAAGGCUUUUC ((((......(((((((.((((((....)))))).))))))).((((((......))))..((((((.((.......((......))..)).))))))..)).))))............ ( -23.00) >consensus UUCAAUUUAAAGUAAUGAUGUGAGCAAUUUCACUCCAUUACUUCCAGCUCCAAUA_GGUUCAUAGUGUCCAUGUUAAUGCCUACCAACAAAACAUGAAAA_____GAACAAAGGCU____ .........(((((((((.(((((....))))).)))))))))..............((((........(((((...(((......)))..))))).........))))........... (-15.75 = -15.79 + 0.04)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
