Structure #182381
Summary
Genome/Assembly | hg17 |
Chromosome/Contig | chr8 |
Strand | - |
Position | 117,112,775 - 117,112,882 |
Number of sequences | 5 |
Organisms | human, mouse, rat, dog, chicken |
Mean pairwise identity | 76.84 |
Columns | 120 |
Mean single MFE | -31.86 |
Consensus MFE | -23.66 |
Combinations/base pair | 40 / 29 = 1.38 |
SCI | 0.74 |
z-score | -3.05 |
RNA class probability | 0.999188 |
This structure is part of cluster 101497
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 5 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 76.84 Mean single sequence MFE: -31.86 Consensus MFE: -23.66 Energy contribution: -22.94 Covariance contribution: -0.72 Mean z-score: -3.05 Structure conservation index: 0.74 SVM decision value: 3.42 SVM RNA-class probability: 0.999188 Prediction: RNA ###################################################################### >hg17.chr8/117112882-117112775 AGUCUUUGUUCUUUUCAUGUUUCAUUGGUAGGCAUUAACAUAGACACUAUGAAGCUAGAGCUGGAAGUAAUGAAGUGAAAUUGUUCACAUCAUUACUUUAAAUUGAA .((((.(((((((.(((........))).)))....)))).)))).......(((....))).((((((((((.(((((....))))).))))))))))........ ( -26.50) >mm5.chr15/51241421-51241310 AGCCAUUGUUCUUCUCAUGUUUUGUCGGUAGACAUUAGCAUGGAUGCUGUGAACCCUAUUGGAGACAGAAGUAAUGGAGUGAAAUUGCUCACACCAUUACUUUAAAUUGAA ...(((.((...((.((((((.((((....))))..)))))))).)).)))........((....))((((((((((.((((......)))).))))))))))........ ( -34.00) >rn3.chr7/87437111-87437001 AGCCAUUGUUCUUUUCAUGUUUUGUCGGUAGACAUUAACAUGGAUGCUGUGAACCUAUUGGAGACAGAAGUAAUGGAGUGAAAUUGCUCACACCAUUACUUUAAAUUGAA ..(((..((((..((((((((.((((....))))..))))))))......))))....))).....((((((((((.((((......)))).))))))))))........ ( -34.50) >canFam1.chr13/18636252-18636142 AGCUUUUGUUCUUUUCAUGUUUUGUUGGUAGGCAUUAACAUGGACACCAUGAACAUAUUGAAGCUGGAAGUAAUGACAUGAAAUUGCUCACAUCAUUACUUUAAAUUGAA (((((((((((..((((((((.((((....))))..))))))))......)))))....)))))).((((((((((..(((......)))..))))))))))........ ( -29.70) >galGal2.chr2/13522115-13522234 GAAAAGCCUUAGUUUCUCCUUUUGUGUGUGUAGCUUGUAGGCAGUAAUGCAGACACAAUGAACUUAUUGGAGUUGGGAGUAAUGGUGUGAGAUUGCUCACAACAUUACUUUAGAUGAAA ......((..(((((......((((((.((((..(((....)))...)))).)))))).)))))....)).(((..((((((((.((((((....)))))).))))))))..))).... ( -34.60) >consensus ____AGCCUUUGUUC_____UUUUCAUGUUUUGUUGGUAGGCAUUAACAUGGACACUAUGAACC_UAUUGGAGAUGGAAGUAAUGGAGUGAAAUUGCUCACACCAUUACUUUAAAUUGAA ...........((((.......((((((((..(((....)))...))))))))......)))).............((((((((((.((((......)))).))))))))))........ (-23.66 = -22.94 + -0.72)