Structure #183233

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr8
Strand	+
Position	128,168,676 - 128,168,768
Number of sequences	3
Organisms	human, mouse, rat
Mean pairwise identity	77.61
Columns	109
Mean single MFE	-46.67
Consensus MFE	-39.47
Combinations/base pair	39 / 31 = 1.26
SCI	0.85
z-score	-3.86
RNA class probability	0.999804

This structure is part of cluster 101980

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 3
 Slice: 1 to 109
 Columns: 109
 Strand: +
 Mean pairwise identity:  77.61
 Mean single sequence MFE: -46.67
 Consensus MFE: -39.47
 Energy contribution: -37.93
 Covariance contribution:  -1.54
 Mean z-score:  -3.86
 Structure conservation index:   0.85
 SVM decision value:   4.12
 SVM RNA-class probability: 0.999804
 Prediction: RNA

######################################################################

>hg17.chr8/128168676-128168768
UGAGGGGCGGGAGAAGGAGACCGUCGCCUUCUGGUGGGUGGUGGGGAUGGACUUCUCCUCCGUCUACCAUGAGGGGAAGUCUCUUUUUGGU
...........((((((((((..((.((((.((((((..((.(((((......))))).))..)))))).)))).)).))))))))))... ( -43.60)
>mm5.chr4/801-910
GGAGGGGGAGGUGGCGGCGGAGGGGCUGGAGAAGGAGACCUUCGCCUUCUGGCAGGAGGGGGAGAGGGACUUCUCCUCCUUCUACUAGAGGGGAAGUCUCUUUCUGGC
..............((((......)))).((((((((((.(((.((((((((.(((((((((((((....))))))))))))).)))))))))))))))))))))... ( -56.20)
>rn3.chr5/807-916
GGUGGGGGAGGAGGGGGAGGAGGGGCUGGAGAAGGAGAUCGUCGUCUUCUGGCAGGAGGUGGGGAAGGACUUCUCCUCCUUCUACUAGAGGGGAAGUCUCUUUUUGGC
........................(((..((((((((((..((.((((((((.((((((.((((((....)))))).)))))).)))))))))).))))))))))))) ( -40.20)
>consensus
GG_GGGGGAGG_GG_GG_GGAGGGGCUGGAGAAGGAGACCGUCGCCUUCUGGCAGGAGGUGGGGAAGGACUUCUCCUCCUUCUACUA_GAGGGGAAGUCUCUUUUUGGC
.............................((((((((((..((.((((.(((.((((((.((((((....)))))).)))))).))).)))).)).))))))))))... (-39.47 = -37.93 +  -1.54) 

	

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Consensus structure

Secondary structure graph

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Montain plot

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Dotplot

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