Structure #189479
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr9 |
| Strand | + |
| Position | 92,134,300 - 92,134,438 |
| Number of sequences | 5 |
| Organisms | human, dog, mouse, rat, chicken |
| Mean pairwise identity | 74.12 |
| Columns | 160 |
| Mean single MFE | -49.82 |
| Consensus MFE | -27.62 |
| Combinations/base pair | 40 / 31 = 1.29 |
| SCI | 0.55 |
| z-score | -1.79 |
| RNA class probability | 0.791881 |
This structure is part of cluster 105502
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 5 Slice: 1 to 160 Columns: 160 Strand: + ?B¦£Ê? Mean pairwise identity: 74.12 Mean single sequence MFE: -49.82 Consensus MFE: -27.62 Energy contribution: -28.02 Covariance contribution: 0.40 Mean z-score: -1.79 Structure conservation index: 0.55 SVM decision value: 0.59 SVM RNA-class probability: 0.791881 Prediction: RNA ###################################################################### >hg17.chr9/92134300-92134438 UGUACCAGCGACCGGGCUAUGGCAGCUGCUGAGGAGAAGCAGCCUCCAUGCAUAAAUCACAGGAUUGCUAUGGCCCAUCGAAUCCACUGGAGAGCUGUCCAUGCACAACAGCAUCCAGCAACCACAGGGCAGGGACAG (((.((.((..(((((((((((((((((((.......)))))).(((.((.........))))).)))))))))))..........(((((..(((((.........))))).)))))........)))).)).))). ( -50.80) >canFam1.chr1/23142789-23142642 UGUAUCAGUGACCGGGCUAUGGCGGCUGCUGAGGAGAAACAGCCCCCAUGCAUAAAUCACAGGAUUGCUCUGGCCCUUCACAUCCACUGGAGAGCUGUACCUGCAAACAGCAUCCAGUAUCCACAGGGCAUGGGGUGUGGGGAGCAG .......((..((((((((.(((((..((((........))))..)).......((((....))))))).))))))..(((((((((((((..(((((........))))).))))))..((....))....)))))))))..)).. ( -55.30) >mm5.chr13/67277336-67277179 UGUACCAAUGACCGGGCUAUGGCAGCUGCUGAGAAGAAACAGCUCCCAUGCAUAAAUCACAGGGUUUUUCUAGCCCAUUGUAUCCACUGGAGAACCGUACCUGCACAACAGCCUCCAGCAACCACAGGGCAGUUUGGGGGGUGGGGGUGGGGGGCAG ...........((((((.((((.(((((((....))...))))).))))))..........(((((.....)))))..........)))).(..((.(((((.(((.....((((((((..((....))..).)))))))))).))))).))..).. ( -53.20) >rn3.chr17/20940038-20940180 UGUACCAAUGACCGGGCUAUGGCAGCUGCUGAGAAGAAGCAGCUCCCAUGCAUAAAUCAAAGGGUUUUUCUAGCCCAUUGUAUCCACUGGAGAACUGUACUGGCACAACAGCCUCCAGCAACCACAGGGCGGUGGGGGGCAG .((((......((((((.((((.(((((((.......))))))).))))))......(((.(((((.....))))).)))......))))......))))..........((((((.((..((....))..)).)))))).. ( -51.90) >galGal2.chr12/16252039-16251906 UGUAACUGUGACCGGGCUAUGGAAGCUGCUCACACAUCACAGACUCCAUGCGUAAAUCACAGUAUCACUUUUGGGCCAUUUCUUCCAACUGAAGCACUGCACACACAAACCAGUGUCCAGUAACCACAGGCCA ....(((((((..(.((.(((((..(((...........)))..))))))).)...)))))))..........((((....((((.....)))).((((.((((........)))).)))).......)))). ( -37.90) >consensus UGUACCAGUGACCGGGCUAUGGCAGCUGCUGAGAAGAAACAGCCCCCAUGCAUAAAUCACAGGAUUGC_UCUGGCCCAUUGCAUCC_ACUGGAGAACUGUACAUGCACAACAGCAUCCAGCAACCACAGGGCA________________GUGGGGGGCAG ....((.((((....((.((((.(((((...........))))).)))))).....)))).))..........((((......(((....)))..((((....(((......)))..)))).......))))............................ (-27.62 = -28.02 + 0.40)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
