Structure #192496
Summary
Genome/Assembly | hg17 |
Chromosome/Contig | chr9 |
Strand | + |
Position | 125,537,083 - 125,537,186 |
Number of sequences | 5 |
Organisms | human, dog, mouse, rat, chicken, zebrafish |
Mean pairwise identity | 77.8 |
Columns | 118 |
Mean single MFE | -18.61 |
Consensus MFE | -9.02 |
Combinations/base pair | 18 / 17 = 1.06 |
SCI | 0.48 |
z-score | -2.06 |
RNA class probability | 0.807773 |
This structure is part of cluster 107113
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 5 Slice: 1 to 118 Columns: 118 Strand: + Mean pairwise identity: 77.80 Mean single sequence MFE: -18.61 Consensus MFE: -9.02 Energy contribution: -9.86 Covariance contribution: 0.84 Mean z-score: -2.06 Structure conservation index: 0.48 SVM decision value: 0.64 SVM RNA-class probability: 0.807773 Prediction: RNA ###################################################################### >hg17.chr9/125537083-125537186 UUAUAAAUUAGAGCAGACAAAUCUGUAUCUCACCCCACGCCGGUAAAGAGCAUUCUAUCAAUAUAGUGAAAUGCUAAUCUCCUAAUUAACAACCUAAUUAGGU .........((((((((....))))).))).(((.......)))....((((((((((....))))...)))))).....((((((((......)))))))). ( -17.80) >canFam1.chr9/3624259-3624156 UUAUAAAUUAGGGCAGACAAAUCUGUAUCUAGCCCCACGCCGGUAAAGAGCAUUCUAUCAAUACAGUGAAAUGCUAAUCUCCUAAUUAACAACCUAAUUAGGU .....((((((((((((....)))))...((((..(((....(((..((........))..))).)))....))))....)))))))....((((....)))) ( -20.20) >mm5.chr2/147310264-147310161 UUAUAAAUUAGGGCAGACAAAUCUGUAUCUAGCCCCACACCAGUAAAGAGCAUUCUAUCAAUAUAGUGAAAUGCUAAUCUCCUAAUUAACAACCUAAUUAGGU ..........(((((((((....))..))).)))).............((((((((((....))))...)))))).....((((((((......)))))))). ( -19.60) >galGal2.chr17/9903183-9903080 UUAUAAAUUAGGGCAGACAAAUCCGUAACUAGAAUCACGCCUGCAAAGAGCAUUCUAUCAAUAUAGUGAAAUGCUAAUCUCCUAAUUAACAACCUAAUUAGGU .....(((((((((((........................))))....((((((((((....))))...)))))).....)))))))....((((....)))) ( -17.96) >danRer1.chrNA/317845591-317845702 UUUUAAAGCAACACACUGGUAACUUACUCCACUGGAACUCCACUCCACCCCUCACUAAACAAGCCACUCUAUCAGUAAAUGCUAAUCUCCUAAUUAACAAGCUAAUUAGGU ......((((....(((((((...........((((.......)))).......((.....))......)))))))...)))).....((((((((......)))))))). ( -17.50) >consensus UUAUAAAUUAGGGCA__GACA_____________AAUCUGUAUCUAGCCCCACGCCAGUAAAGAGCAUUCUAUCAAUAUAGUGAAAUGCUAAUCUCCUAAUUAACAACCUAAUUAGGU ...............................................................((((((.(((.......))).)))))).....((((((((......)))))))). ( -9.02 = -9.86 + 0.84)