Structure #192509
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr9 |
| Strand | - |
| Position | 125,537,265 - 125,537,384 |
| Number of sequences | 5 |
| Organisms | human, dog, mouse, rat, chicken |
| Mean pairwise identity | 88.94 |
| Columns | 120 |
| Mean single MFE | -29.02 |
| Consensus MFE | -20.9 |
| Combinations/base pair | 30 / 27 = 1.11 |
| SCI | 0.72 |
| z-score | -2.69 |
| RNA class probability | 0.923616 |
This structure is part of cluster 107113
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 5 Slice: 1 to 120 Columns: 120 Strand: + j퍳?x Mean pairwise identity: 88.94 Mean single sequence MFE: -29.02 Consensus MFE: -20.90 Energy contribution: -21.42 Covariance contribution: 0.52 Mean z-score: -2.69 Structure conservation index: 0.72 SVM decision value: 1.16 SVM RNA-class probability: 0.923616 Prediction: RNA ###################################################################### >hg17.chr9/125537384-125537265 CAAGAUGUUUCUUUUGUAAACUACUUCUGUCCAAAGCAUUCUGUAUAUUAUCAGAAUGAAAAAUGACAGCACUUUGUCAUCUGUUCAAAUUGAUAUUGCACUCUUUGCAAUGACAGCUG ..((.((((....(((((((.......((((.....(((((((........)))))))......))))(((...(((((...........))))).)))....))))))).)))).)). ( -24.70) >canFam1.chr9/3624338-3624458 CAAGAUGUUUCUUUUUGUAAACUGCUUCUGUCCAAAGCAUUCUGUAUAUUAUCAGAAUGAAAAAUGACAGCACUUUGUCAUCUGUUCAAAUUGAUAUUGCACUCUAUGCAAUGACAGCUG .((((....))))..............(((((....((((..((((...((((((..((((..(((((((....)))))))...))))..)))))).))))....))))...)))))... ( -25.80) >mm5.chr2/147310343-147310461 CAACUUGUUUCCUUUGUAAACUGCUCUGUCCAAAGCAUUCUGUGUAUUAUCAGAAUGAAAAAUGACAGCACUUUGUCAUCUGCUCAAAUUGAUACUGCACUCUUCAGGAUGACAGCUG ....(((((((((........((((........))))....(((((.((((((..(((.(.(((((((....))))))).)..)))..)))))).))))).....)))).)))))... ( -26.40) >rn3.chr3/157625331-157625449 CAAGUUGUUUCCUUUGUAAACUGCUUUGUCCAAAGCAUUCUGUGUAUUAUCAGAAUGAAAAAUGACAGCACUUUGUCAUCCGCUCAAAUUGAUACUGCACUCUUCAGGAUGACAGCUG ..(((((((((((........((((((....))))))....(((((.((((((..(((...(((((((....)))))))....)))..)))))).))))).....)))).))))))). ( -33.90) >galGal2.chr17/9903262-9903381 CAAGAUGCAGCUUUUCUAAACUGUUUCUUUCCAAACCAUUCAGUGCAAUAUCAGAAUGAAAAAUGACAACACUUUGUCAUCUGUUCAAAUUGAUAUUGCACUCUUUGCAGUGACAGCUG .((((.((((.((....)).)))).)))).......((...(((((((((((((..((((..(((((((....)))))))...))))..)))))))))))))...))((((....)))) ( -34.30) >consensus CAAGAUGUUUCUUUU_GUAAACUGCUUCUGUCCAAAGCAUUCUGUGUAUUAUCAGAAUGAAAAAUGACAGCACUUUGUCAUCUGUUCAAAUUGAUAUUGCACUCUUUGCAAUGACAGCUG ...........................(((((...........(((((.((((((..((((..(((((((....)))))))...))))..)))))).)))))..........)))))... (-20.90 = -21.42 + 0.52)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
