Structure #192510
Summary
Genome/Assembly | hg17 |
Chromosome/Contig | chr9 |
Strand | - |
Position | 125,537,305 - 125,537,409 |
Number of sequences | 5 |
Organisms | human, dog, mouse, rat, chicken |
Mean pairwise identity | 85.74 |
Columns | 116 |
Mean single MFE | -20.9 |
Consensus MFE | -14.29 |
Combinations/base pair | 22 / 20 = 1.10 |
SCI | 0.68 |
z-score | -1.74 |
RNA class probability | 0.550354 |
This structure is part of cluster 107113
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 5 Slice: 1 to 116 Columns: 116 Strand: + Mean pairwise identity: 85.74 Mean single sequence MFE: -20.90 Consensus MFE: -14.29 Energy contribution: -14.81 Covariance contribution: 0.52 Mean z-score: -1.74 Structure conservation index: 0.68 SVM decision value: 0.03 SVM RNA-class probability: 0.550354 Prediction: RNA ###################################################################### >hg17.chr9/125537409-125537305 AUAUUUAAAUUAGGAAAAUAUCAGGCAAGAUGUUUCUUUUGUAAACUACUUCUGUCCAAAGCAUUCUGUAUAUUAUCAGAAUGAAAAAUGACAGCACUUUGUCA ...((((....((((((.((((......))))))))))...))))......(((((.....(((((((........)))))))......))))).......... ( -20.10) >canFam1.chr9/3624378-3624483 AUAUUUAAAUUAGGAAAAUGCCAGGCAAGAUGUUUCUUUUUGUAAACUGCUUCUGUCCAAAGCAUUCUGUAUAUUAUCAGAAUGAAAAAUGACAGCACUUUGUCA ............(((....((...((((((.......)))))).....)).....)))....(((((((........))))))).....((((((....)))))) ( -20.60) >mm5.chr2/147310383-147310486 AUAUUUAAAUUAGGAAAAUAGCAGACAACUUGUUUCCUUUGUAAACUGCUCUGUCCAAAGCAUUCUGUGUAUUAUCAGAAUGAAAAAUGACAGCACUUUGUCA ............(((....(((((((((..........))))...)))))...)))....(((((((........))))))).....((((((....)))))) ( -21.20) >rn3.chr3/157625371-157625474 AUAUUUAAAUUAGGAAAAUAGCAGGCAAGUUGUUUCCUUUGUAAACUGCUUUGUCCAAAGCAUUCUGUGUAUUAUCAGAAUGAAAAAUGACAGCACUUUGUCA ............(((....((((((((((........)))))...)))))...)))....(((((((........))))))).....((((((....)))))) ( -23.80) >galGal2.chr17/9903302-9903417 AUAUUUAGAUUAGGCAAAAAAAAAAAAAAACCCAGGCAAGAUGCAGCUUUUCUAAACUGUUUCUUUCCAAACCAUUCAGUGCAAUAUCAGAAUGAAAAAUGACAACACUUUGUCA .(((((.(((...((...................((.((((.((((.((....)).)))).)))).))..((......))))...))).))))).....((((((....)))))) ( -18.80) >consensus AUAUUUAAAUUAGG___________AAAAUACCAGGCAAGAUGUUUCUUUU_GUAAACUGCUUCUGUCCAAAGCAUUCUGUGUAUUAUCAGAAUGAAAAAUGACAGCACUUUGUCA ..................................((((((.((....................(((((.....(((((((........)))))))......))))))).)))))). (-14.29 = -14.81 + 0.52)