Structure #194774

Summary

Genome/Assembly	hg17
Chromosome/Contig	chrX
Strand	+
Position	20,510,387 - 20,510,503
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	81.98
Columns	120
Mean single MFE	-32.96
Consensus MFE	-25.1
Combinations/base pair	48 / 37 = 1.30
SCI	0.76
z-score	-2.35
RNA class probability	0.972823

This structure is part of cluster 108394

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  81.98
 Mean single sequence MFE: -32.96
 Consensus MFE: -25.10
 Energy contribution: -25.85
 Covariance contribution:   0.75
 Mean z-score:  -2.35
 Structure conservation index:   0.76
 SVM decision value:   1.70
 SVM RNA-class probability: 0.972823
 Prediction: RNA

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>hg17.chrX/20510387-20510503
CAGUAAUUGAGGGCUUCCAAAUUCUCUGUGGGUGUUAGAGCUUCUGUUUUCUAAUGGUAGAGAAGGGAAUGUUUUGUUUUGUCAGAAUUAGCUUUUGUGGGGGCUUUCAAAUACUU
.((((.((((((((((((......(((((..(...((((((((((.(((((((....))))))).)))).)))))).)..).))))....((....)))))))))))))).)))). ( -37.70)
>mm5.chrX/11994627-11994507
UAGUCACUAACAGCCUCUAAAUUUUCUGUGGGUGUCAGAACUUCUGUUUCCUAAUGUUGGAGAAGAAAAUGUUUUGCUUUGUUUUUCAGAAUUCAUUUUUGUGAGAGCUUUCAAAUACCC
.........((((............))))((((((((((((((((.(((((.......)))))))))...))))))....(((((((((((.....))))).))))))......)))))) ( -22.90)
>rn3.chrX/57582250-57582370
UAGUCACAAACGGCCUCCAAAUUUUCUGUGGGUGUCAGAGCUUCUGUUUCCUAAUGUUGGAGAAGAGAAUGUUUUGCUUUGUUUUUCAGAAUUCGUUUUUGUGGAGGCUUUCAAACACUC
...........((((((((....(((((..((...((((((((((.(((((.......)))))..))))......)))))).))..)))))..........))))))))........... ( -30.44)
>canFam1.chrX/16483951-16484067
CUGUCAUUGAGGGCUUCCAAAUUCUCGGUGGGUGUUAGAGCUUCUGUCUUCUAAUGGUAGAGGAGAGAAUGUUUUGUCUUGUCAGAAUUAGCUUUUGUGGGAGUUUUCAAAUACUC
......((((((((((((.((((((.((..((...((((((((((.(((((((....))))))).)))).)))))).))..)))))))).((....))))))))))))))...... ( -40.80)
>consensus
CAGUCACUAACGGCCUCCAAAUUCUCUGUGGGUGUCAGAGCUUCUGUUUCCUAAUGGUAGAGAAGAGAAUGUUUUGCUUUG____UCAGAAUUAGCUUUUGUGGGAGCUUUCAAAUACUC
..((..(((((((((((((................((((((((((.(((((((....))))))).)))).))))))..........(((((.....))))))))))))))))))..)).. (-25.10 = -25.85 +   0.75)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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