Structure #196268

Summary

Genome/Assembly	hg17
Chromosome/Contig	chrX
Strand	-
Position	39,527,756 - 39,527,861
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	80.66
Columns	107
Mean single MFE	-44.73
Consensus MFE	-34.2
Combinations/base pair	45 / 34 = 1.32
SCI	0.76
z-score	-2.22
RNA class probability	0.967603

This structure is part of cluster 109240

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 107
 Columns: 107
 Strand: +
 Mean pairwise identity:  80.66
 Mean single sequence MFE: -44.72
 Consensus MFE: -34.20
 Energy contribution: -34.95
 Covariance contribution:   0.75
 Mean z-score:  -2.22
 Structure conservation index:   0.76
 SVM decision value:   1.61
 SVM RNA-class probability: 0.967603
 Prediction: RNA

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>hg17.chrX/39527861-39527756
UGAGGCUGGUGGAUGCUAGCCAGAGAGGGCCCUAGGUUGCAUCAGGGAACCGUCUGCAAAUCUGUGCAGAGGGCGAUGGCGUGGGGGUGGCUUUCUUGUGGGGAG
...(((((((....))))))).(((((((((((...(..(..((.....((.((((((......)))))).))...))..)..).)).)))))))))........ ( -41.20)
>mm5.chrX/10231832-10231726
UGAGGCUGGUGGCUGCCAGCCAGCCAGGGCCCUCAAUCACAUUAGGGAGCCAUCUACAAAUCUCCCUGCAGGGGGUGGCGGCUGUGGGAUGCUUUCCUGUAGGGAG
...(((((((((...))).))))))..(((((..(((...)))..)).)))..........(((((((((((((..((((.(.....).))))))))))))))))) ( -46.40)
>rn3.chrX/137729105-137729211
UGAGGCUGGUGGCUGCCAGCCAGGCAGGGCCCUCAAUCACAUUAGGGAGCCAUCUACAAAUCUCCCUGCAGGAGGUGGCGGCUGUGGGAUGCUUUCCUGUAGGGAG
...(((((((....))))))).(((....((((..........)))).)))..........(((((((((((((..((((.(.....).))))))))))))))))) ( -47.80)
>canFam1.chrX/34313195-34313093
UGAGGCUGGUGGAUGCCAGCCAGGGAGGGUCUUAGAUCAGGGAGCCAUCUGCAAAUCUUCGUGCAGGGGGUGGUGGCCUGAGGGCAGCUUUCCUGAGGGGAG
...(((((((....))))))).((((((((......(((((..((((((((((........)))))...)))))..))))).....))))))))........ ( -43.50)
>consensus
UGAGGCUGGUGGAUGCCAGCCAGGCAGGGCCCUAAAUCACAUCAGGGAGCCAUCUACAAAUCUCCCUGCAGGGGGUGGCGGC_UGUGGGAUGCUUUCCUGUAGGGAG
...(((((((....))))))).....((.((((.((.....))))))..))..........(((((((((((((..((((((......))))))))))))))))))) (-34.20 = -34.95 +   0.75)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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