Structure #196500

Summary

Genome/Assembly	hg17
Chromosome/Contig	chrX
Strand	-
Position	40,146,822 - 40,146,941
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	76.68
Columns	120
Mean single MFE	-47.78
Consensus MFE	-24.6
Combinations/base pair	43 / 34 = 1.26
SCI	0.51
z-score	-2.77
RNA class probability	0.979585

This structure is part of cluster 109345

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  76.68
 Mean single sequence MFE: -47.78
 Consensus MFE: -24.60
 Energy contribution: -27.48
 Covariance contribution:   2.87
 Mean z-score:  -2.77
 Structure conservation index:   0.51
 SVM decision value:   1.84
 SVM RNA-class probability: 0.979585
 Prediction: RNA

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>hg17.chrX/40146941-40146822
ACAAAUCACAAGGCAAAUUGAGGCCAGUCAGUUUCUGGGUGAACCCGGCAACAGUUCCACUGCGGGUGUAAGGGUGGUAUUGCUGAUGCGCGGGCCUGUGGGGUCACCCACACAAAGCC
...........(((......(((((.(((((...(((((....)))))...((((.(((((.(........)))))).))))))))).....)))))(((((....))))).....))) ( -44.30)
>mm5.chrX/10857172-10857055
ACAGAUCAUGAGGCAAUUUGAAGCCAGGCUGUUUUAGGUCAAACCCAGCAACAGUUUGGCUGUGGGCUAAAGUGUUGGCCAGGCUGGGCGUGGGCCUGGCGGUCCAUGCACAAAGCC
.(((((.........))))).((((((((((((((.((.....)).)).))))))))))))...((((((....)))))).((((..(((((((((....)))))))))....)))) ( -48.70)
>rn3.chrX/138366802-138366919
ACAGAUCAUGAGGCAAUUUGAGGCCAGGCUGUUUUAGGUUAAACCCAGCAACAGUUUGGCUGUGGGCUAGAGAGUUGGCCAGGCUGGGCGUGGGUCUGGCGAUCCAUGCACAAAGCC
.(((((.........))))).((((((((((((((.((.....)).)).))))))))))))...((((((....)))))).((((..(((((((((....)))))))))....)))) ( -46.40)
>canFam1.chrX/34821394-34821275
ACAAAUCACAAGGCAAAUUGAGUCCAGUCUGUUUCUGGGUGAACCCAGAAACAGUUUCAUUGUGGGCUUAAGGGUGGGAUUGCUACGGCGCAGGCCUGUGGGGUCACCCGCACAAAGCC
...........(((...((((((((((.(((((((((((....)))))))))))...)....)))))))))..(((((...((....))...((((.....)))).))))).....))) ( -51.70)
>consensus
ACAAAUCACAAGGCAAAUUGAGGCCAGGCUGUUUCAGGGUAAACCCAGCAACAGUUUCACUGUGGGCUAAAGGGU_GGCAAGGCUGG_GCGCGGGCCUGGCGGGCCAC__GCACAAAGCC
...........(((.......((((((((((((.((((......)))).))))))))))))..(((((...(.((.((.....))...)).).)))))(((((....))))).....))) (-24.60 = -27.48 +   2.87)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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