Structure #196505

Summary

Genome/Assembly	hg17
Chromosome/Contig	chrX
Strand	+
Position	40,146,862 - 40,146,980
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	82.54
Columns	120
Mean single MFE	-38.8
Consensus MFE	-30.19
Combinations/base pair	40 / 33 = 1.21
SCI	0.78
z-score	-3.6
RNA class probability	0.998979

This structure is part of cluster 109345

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  82.54
 Mean single sequence MFE: -38.80
 Consensus MFE: -30.19
 Energy contribution: -30.75
 Covariance contribution:   0.56
 Mean z-score:  -3.60
 Structure conservation index:   0.78
 SVM decision value:   3.31
 SVM RNA-class probability: 0.998979
 Prediction: RNA

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>hg17.chrX/40146862-40146980
UACCACCCUUACACCCGCAGUGGAACUGUUGCCGGGUUCACCCAGAAACUGACUGGCCUCAAUUUGCCUUGUGAUUUGUUUGUUAGCUUUACAAAUGGCUUUUGAGGCCAGACAACCC
..((((.............))))....((((..(((....))).........((((((((((...(((((((((...(((....))).))))))..)))..)))))))))).)))).. ( -39.52)
>mm5.chrX/10857092-10857211
GGCCAACACUUUAGCCCACAGCCAAACUGUUGCUGGGUUUGACCUAAAACAGCCUGGCUUCAAAUUGCCUCAUGAUCUGUUUGUUAGCUUUACAAAUGGCUCUUAAGGCCAGACUGCCC
(((................(((((..(((((..((((.....)))).)))))..))))).......((((...((.((((((((.......)))))))).))...))))......))). ( -33.80)
>rn3.chrX/138366959-138366839
GGCCAACUCUCUAGCCCACAGCCAAACUGUUGCUGGGUUUAACCUAAAACAGCCUGGCCUCAAAUUGCCUCAUGAUCUGUUUGUUAGCUUUACAGAUGGCUUUUGAGGCCAAACUGCCCC
(((.........((((((((((......)))).))))))...........((..((((((((((..(((.....((((((..(....)...))))))))).))))))))))..))))).. ( -40.80)
>canFam1.chrX/34821315-34821433
UCCCACCCUUAAGCCCACAAUGAAACUGUUUCUGGGUUCACCCAGAAACAGACUGGACUCAAUUUGCCUUGUGAUUUGUUUGUUAGCUUUACAAAUGGCUUUUGAGGCCAGACAACCC
.........................(((((((((((....))))))))))).((((.(((((...(((((((((...(((....))).))))))..)))..))))).))))....... ( -41.10)
>consensus
GGCC_ACCCUUAAGCCCACAGCCAAACUGUUGCUGGGUUCAACCAAAAACAGACUGGCCUCAAAUUGCCUCAUGAUCUGUUUGUUAGCUUUACAAAUGGCUUUUGAGGCCAGACAA_CCC
............((((((((((......)))).))))))..........(((.((((((((((...(((.....((((((..(....)...)))))))))..)))))))))).))).... (-30.19 = -30.75 +   0.56)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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