Structure #196718

Summary

Genome/Assembly	hg17
Chromosome/Contig	chrX
Strand	-
Position	43,698,103 - 43,698,193
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	83.86
Columns	90
Mean single MFE	-25.77
Consensus MFE	-18.75
Combinations/base pair	39 / 28 = 1.39
SCI	0.73
z-score	-3.69
RNA class probability	0.997038

This structure is part of cluster 109490

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 90
 Columns: 90
 Strand: +
 Mean pairwise identity:  83.86
 Mean single sequence MFE: -25.77
 Consensus MFE: -18.75
 Energy contribution: -19.75
 Covariance contribution:   1.00
 Mean z-score:  -3.69
 Structure conservation index:   0.73
 SVM decision value:   2.79
 SVM RNA-class probability: 0.997038
 Prediction: RNA

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>hg17.chrX/43698193-43698103
AUGUUUGUAUUCAACAAACUAAAUUUGGUUUGAAUCCGGACUUGGAGGUUGUCCCAACGGAUUCAAGCAGACUGAAAAGUCAUGAACAAA
..((((((.....))))))....(((((((((((((((...((((........))))))))))))))).((((....)))).....)))) ( -30.00)
>mm5.chrX/15378624-15378535
AUGUUUGUAUGCAACAAGCCAAAUUUAGUUUGGCUUGGAGUUGGAGGAUGUUCUGAUGAAUUCAAACAGAUUGAAAAGUCACGAACAAA
.(((((((..((..((((((((((...))))))))))..))((...((.((((....))))))...))((((....))))))))))).. ( -26.40)
>rn3.chrX/143446669-143446758
AUGUUUGUAUACAACAAGCCAAAGUUGGUUUGGUUUGGAGUUGGAGGAUGUUCUGAUGAAUUCAAACAGAUUGAAAAGUCAUGAACAAA
.((((..(......(((((((....)))))))(((((((((..(((....)))..))...))))))).((((....)))))..)))).. ( -24.40)
>canFam1.chrX/37881431-37881342
AUGUUUGUAUGCAGCAAGCUAAAUUUGGUUUGAAUCUUGACUUGGAGGUUGUUCAAUGGAUUCAAACAGAUUGGAAAAUCAUAAACAAA
..((((((.....))))))....((((((((((((((....(((((.....))))).)))))))))).((((....)))).....)))) ( -22.30)
>consensus
AUGUUUGUAUGCAACAAGCCAAAUUUGGUUUGAAUC_GGACUUGGAGGAUGUUCUAAUGAAUUCAAACAGAUUGAAAAGUCAUGAACAAA
.(((((((...................(((((((((((...((((((....))))))))))))))))).((((....))))))))))).. (-18.75 = -19.75 +   1.00)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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