Structure #196844
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chrX |
| Strand | + |
| Position | 45,492,123 - 45,492,242 |
| Number of sequences | 6 |
| Organisms | human, dog, mouse, rat, chicken, zebrafish |
| Mean pairwise identity | 75.75 |
| Columns | 120 |
| Mean single MFE | -31.96 |
| Consensus MFE | -16.3 |
| Combinations/base pair | 47 / 30 = 1.57 |
| SCI | 0.51 |
| z-score | -1.9 |
| RNA class probability | 0.775894 |
This structure is part of cluster 109551
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 6 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 75.75 Mean single sequence MFE: -31.96 Consensus MFE: -16.30 Energy contribution: -15.06 Covariance contribution: -1.24 Mean z-score: -1.90 Structure conservation index: 0.51 SVM decision value: 0.54 SVM RNA-class probability: 0.775894 Prediction: RNA ###################################################################### >hg17.chrX/45492123-45492242 UUUCCUGGGGAAUUAAUAGCCAGCUGGGGUUAACAGUCCUUGGUUCGACUUUAGGCCAUCAACUCUUCUUGCUGCUCAUUAAUUCCCAGAAAGUGCCCUGUGCCUUGAUGGUUAUUGCU ((((...(((((((((((((.(((.((((((....(.(((.((.....))..))))....))))))....)))))).)))))))))).))))..((.....(((.....)))....)). ( -32.70) >canFam1.chrX/39473438-39473557 UUUCCUGGGGAAUUAAUAGCCAGCUGGGGUUAACGGUCCUUGGUUUGACUUUGGGCCAUCAACCCUUCUUGCUUCUCAUUAAUUCCCAGAAUGUACCGUGUGCCUUGAUGGUUAUUGCU ....(((((.((((((((((.((..((((((...(((((..((.....))..)))))...)))))).)).)))....))))))))))))((((.(((((........)))))))))... ( -39.10) >mm5.chrX/17597777-17597895 CUUCCUGGGGAAUUAAUAGCCAGUUGGGGUUAACGGUCCUUGUUCCACUUUAGACCAUCAAACCUUCUUGCUGAUCGUUAAUUCCCAGAAAAUGUCCUGUGCCUUGAUGGUUAUUGCU .(((...(((((((((..(.((((.((((((...((((...(.....)....))))....))))))...)))).)..))))))))).)))...((.....(((.....)))....)). ( -28.60) >rn3.chrX/145954164-145954045 UUUCCUGGGGAAUUAAUAGCCAGCUGAGGUUAACAGUCCUUCGUUCAACUUUAGACCAUCAAGCCUUCUUGCUGCUCAUUAAUUCCCAGAAAAUACCCUGUGCCUUGAUGGUUAUUGCU ((((...(((((((((((((.(((.((((((....(((...............))).....))))))...)))))).)))))))))).)))).........(((.....)))....... ( -29.06) >galGal2.chr1/83958399-83958280 UUUUCAGGGAAAUUAAUGACUAGCUGAAGUUAAUGGCCCUGAGCUUCACAUUGGCCCAUCAACUCUCCUGGUCAGUCAUUAAUUCCCAGGAAAUACCUUGUACCUUGAUUGUUAUUGCU ...((((((.(((((((((((..((((((((.((((.((.............)).)))).)))).))..))..)))))))))))..((((......))))..))))))........... ( -31.92) >danRer1.chrNA/107870636-107870518 UUUCAGGAGAUUAAUGGUAGACCGAAGCUAAUAGCCUUUGGCUGACUCUCCAGCCAUCAGCUUUUCCCAGCUGCUCAUUAAUUCCCAGAAAAUGUCAUACAUUGCCAUCAUUAUUGUU ((((.((..(((((((((((...((((.....(((...((((((......))))))...)))))))....)))).)))))))..)).))))(((.((.....)).))).......... ( -30.40) >consensus UUUCCUGGGGAAUUAAUAGCCAGCUGAGGUUAACAGUCCUUGGUUCAACUUUAGGCCAUCAACCCUUCUU_GCUGCUCAUUAAUUCCCAGAAAAUACCCUGUGCCUUGAUGGUUAUUGCU .(((...(((((((((((((.((..((((((....(((...............)))....))))))..)).)))....)))))))))).)))..........(((.....)))....... (-16.30 = -15.06 + -1.24)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
