Structure #196847
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chrX |
| Strand | - |
| Position | 45,492,123 - 45,492,242 |
| Number of sequences | 6 |
| Organisms | human, dog, mouse, rat, chicken, zebrafish |
| Mean pairwise identity | 75.75 |
| Columns | 120 |
| Mean single MFE | -34.3 |
| Consensus MFE | -24.58 |
| Combinations/base pair | 45 / 32 = 1.41 |
| SCI | 0.72 |
| z-score | -2.49 |
| RNA class probability | 0.989492 |
This structure is part of cluster 109551
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 6 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 75.75 Mean single sequence MFE: -34.30 Consensus MFE: -24.58 Energy contribution: -24.72 Covariance contribution: 0.14 Mean z-score: -2.49 Structure conservation index: 0.72 SVM decision value: 2.17 SVM RNA-class probability: 0.989492 Prediction: RNA ###################################################################### >hg17.chrX/45492242-45492123 AGCAAUAACCAUCAAGGCACAGGGCACUUUCUGGGAAUUAAUGAGCAGCAAGAAGAGUUGAUGGCCUAAAGUCGAACCAAGGACUGUUAACCCCAGCUGGCUAUUAAUUCCCCAGGAAA .((.....((.....))......))..((((((((((((((((..((((.....(.(((((((((((............))).)))))))))...))))..)))))))).)))))))). ( -32.80) >canFam1.chrX/39473557-39473438 AGCAAUAACCAUCAAGGCACACGGUACAUUCUGGGAAUUAAUGAGAAGCAAGAAGGGUUGAUGGCCCAAAGUCAAACCAAGGACCGUUAACCCCAGCUGGCUAUUAAUUCCCCAGGAAA .......(((............)))...((((((((((((((....(((.((..((((((((((.((.............)).))))))))))...)).)))))))))).))))))).. ( -36.22) >mm5.chrX/17597895-17597777 AGCAAUAACCAUCAAGGCACAGGACAUUUUCUGGGAAUUAACGAUCAGCAAGAAGGUUUGAUGGUCUAAAGUGGAACAAGGACCGUUAACCCCAACUGGCUAUUAAUUCCCCAGGAAG ........((.....))..........((((((((((((((.(..(((......((.((((((((((............)))))))))).))...)))..).)))))).)))))))). ( -30.20) >rn3.chrX/145954045-145954164 AGCAAUAACCAUCAAGGCACAGGGUAUUUUCUGGGAAUUAAUGAGCAGCAAGAAGGCUUGAUGGUCUAAAGUUGAACGAAGGACUGUUAACCUCAGCUGGCUAUUAAUUCCCCAGGAAA .......(((............))).(((((((((((((((((..((((....(((.((((((((((...(.....)...)))))))))))))..))))..)))))))).))))))))) ( -35.60) >galGal2.chr1/83958280-83958399 AGCAAUAACAAUCAAGGUACAAGGUAUUUCCUGGGAAUUAAUGACUGACCAGGAGAGUUGAUGGGCCAAUGUGAAGCUCAGGGCCAUUAACUUCAGCUAGUCAUUAAUUUCCCUGAAAA ...........(((.......(((.....)))(((((((((((((((.(...((.(((((((((.((...(.....)...)).))))))))))).).))))))))))))))).)))... ( -37.10) >danRer1.chrNA/107870518-107870636 AACAAUAAUGAUGGCAAUGUAUGACAUUUUCUGGGAAUUAAUGAGCAGCUGGGAAAAGCUGAUGGCUGGAGAGUCAGCCAAAGGCUAUUAGCUUCGGUCUACCAUUAAUCUCCUGAAA .........((((.((.....)).))))(((.((..(((((((..(((((......)))))..((((((((....((((...)))).....))))))))...)))))))..)).))). ( -33.90) >consensus AGCAAUAACCAUCAAGGCACAGGGCAUUUUCUGGGAAUUAAUGAGCAGC_AAGAAGAGUUGAUGGCCUAAAGUCGAACCAAGGACCGUUAACCCCAGCUGGCUAUUAAUUCCCCAGGAAA ...........................((((((((((((((((..((((......((((((((((.((.............)).))))))))))..))))..)))))))).)))))))). (-24.58 = -24.72 + 0.14)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
