Structure #196935

Summary

Genome/Assembly	hg17
Chromosome/Contig	chrX
Strand	-
Position	47,004,300 - 47,004,438
Number of sequences	4
Organisms	human, dog, mouse, rat
Mean pairwise identity	81.79
Columns	139
Mean single MFE	-43
Consensus MFE	-27.8
Combinations/base pair	37 / 32 = 1.16
SCI	0.65
z-score	-2.08
RNA class probability	0.842531

This structure is part of cluster 109608

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 139
 Columns: 139
 Strand: +
 Mean pairwise identity:  81.54
 Mean single sequence MFE: -43.00
 Consensus MFE: -27.80
 Energy contribution: -27.86
 Covariance contribution:   0.06
 Mean z-score:  -2.08
 Structure conservation index:   0.65
 SVM decision value:   0.78
 SVM RNA-class probability: 0.848260
 Prediction: RNA

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>hg17.chrX/47004438-47004300
UUUUUUUCACAUGUGGGGCAUUUGUUCAUAGAGAGGUCACAAGUUUUGUGCCCCCCGUCACAAUGACCCCAGAUUCCUAUUGGGUGUGUUGUAAACAGAAGAAGCAUUCUUCAGGCCCCCUGCUCUGAGCACACCCCA
..........((.(((((((((.((.....(.(.((.((((.....)))))).).)...)))))).))))).)).......(((((((((.......(((((.....)))))((((.....)).)).))))))))).. ( -38.30)
>canFam1.chr??/0-138
UUUUUUUCACAUGUAGGGUAUUUGUUCAUAGGAAGGCCACAGGUUUUGUGCCCCUUGUCACAAUGAACCCAGAUUCCUGUUGGGUGUGUUGUAAACAGAGGGGCCAUUUCUUCAGGCCCCCUGCUCUGAGCACACCCC
...............((((...((((((((((..((((..(((...((.(((((((.(.((((((.((((((.......)))))).)))))).)...)))))))))...)))..)))).))))...)))))).)))). ( -49.30)
>mm5.chr15/58342964-58342835
CACAUGUAGGGGAUCCAUUCACAGAGAGGGAACUGCUUGUGCCCCUCAUUACAAUGGUCCCAGAUUCUUCUUGGGUGUGUUGUAAACAGAGAAGCCAUUCUUCAGGCCACCUGCUCUGAGCACACCCCA
.........((((.(((((....(((.(((.((.....)).)))))).....)))))))))...........(((((((((.....(((((..(((........)))......)))))))))))))).. ( -43.70)
>rn3.chr1/0-136
UUUUUUUCACAUGUAGGGGAUCCACACACAGAGAGGAAACUGCUUGUGCCCCACAUUUCAAUGGUCCCAGAUUCUUCUUGGGUGUGUUGUAAACAGAGAAGCCAUUCUUCAGGCCCUCUGCUCUGAGCACACCCCA
..........((((.((((.......(((((..((....))..))))))))))))).......................(((((((((.....(((((..(((........))).))))).....))))))))).. ( -40.71)
>consensus
UUUUUUUCACAUGUAGGGGAUCCAUUCACAGAGAGGAAACAG__CUUGUGCCCCUCAUCACAAUGAUCCCAGAUUCCUCUUGGGUGUGUUGUAAACAGAGAAGCCAUU_CUUCAGGCCCCCUGCUCUGAGCACACCCCA
...............((((..(((((........((.(((.......))).))........)))))))))...........(((((((((.....(((((............((((...)))))))))))))))))).. (-27.80 = -27.86 +   0.06)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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