Structure #197020

Summary

Genome/Assembly	hg17
Chromosome/Contig	chrX
Strand	-
Position	48,556,034 - 48,556,105
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	80.96
Columns	73
Mean single MFE	-19.5
Consensus MFE	-17.35
Combinations/base pair	26 / 19 = 1.37
SCI	0.89
z-score	-3.09
RNA class probability	0.999002

This structure is part of cluster 109650

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 73
 Columns: 73
 Strand: +
 Mean pairwise identity:  80.96
 Mean single sequence MFE: -19.50
 Consensus MFE: -17.35
 Energy contribution: -17.60
 Covariance contribution:   0.25
 Mean z-score:  -3.09
 Structure conservation index:   0.89
 SVM decision value:   3.32
 SVM RNA-class probability: 0.999002
 Prediction: RNA

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>hg17.chrX/48556105-48556034
UCCCUGGGAUGUUUCCCAGAGGAAGAGCUGGGUUUCGGGGCAUCUUGGACAAAAGAAAGGCAAAGAAAGAA
(((((((((....)))))).))).........((((...((.((((......))))...))...))))... ( -21.60)
>mm5.chrX/154486821-154486894
UCCCUGGGAAAUUUACUAGAGAAAGACCUGAGUUUGGAAAUAUCUUAGGGAUAAAAGGAAAGCAGAGAAUGAA
(((((((((.((((.(((((............))))))))).)))))))))...................... ( -15.50)
>rn3.chrX/26729913-26729840
UCCCUGGGAUACUUACUAGAGAAAGACCUGGGUUUGGAAGUAUCUUAGGGAUAAAAAGAAAGCAGAGAAUGAA
((((((((((((((.((((........))))......))))))))))))))...................... ( -22.70)
>canFam1.chrX/41910360-41910289
UCCCUGGGAUGUUUCCUAGAGAAAGAACUGGGUUUUGGGGCAUCUUGGGCCAAAGGAAAGCAAAGAAAGAA
..((..(((((((((((((........))))).....))))))))..))...................... ( -18.20)
>consensus
UCCCUGGGAUAUUUACUAGAGAAAGACCUGGGUUUGGAAGCAUCUU__GGACAAAAGGAAAGCAAAGAAAGAA
(((((((((((((((((((........))))).....))))))))))))))...................... (-17.35 = -17.60 +   0.25) 

	

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Consensus structure

Secondary structure graph

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Montain plot

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Dotplot

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