Structure #198302

Summary

Genome/Assembly	hg17
Chromosome/Contig	chrX
Strand	-
Position	68,326,811 - 68,326,931
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	84.03
Columns	120
Mean single MFE	-36.8
Consensus MFE	-24.85
Combinations/base pair	36 / 31 = 1.16
SCI	0.68
z-score	-1.92
RNA class probability	0.766046

This structure is part of cluster 110219

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  84.03
 Mean single sequence MFE: -36.80
 Consensus MFE: -24.85
 Energy contribution: -25.92
 Covariance contribution:   1.06
 Mean z-score:  -1.92
 Structure conservation index:   0.68
 SVM decision value:   0.52
 SVM RNA-class probability: 0.766046
 Prediction: RNA

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>hg17.chrX/68326931-68326811
CUCCUCUGGCCUCCCUCAGGAUGCAGGCUGUUGCCUGGAGCCAGGCAGUCCGUGGAAGCCCCAUCCUCCGUCCCCAGAGACAGCUCAAAUGACCAUUAAGCCCUGAGCAGAUGCAGGCAG
........((((.(.((((((((..((((.(((((((....)))))))((....)))))).))))))..(((......))).(((((................))))).)).).)))).. ( -39.99)
>mm5.chrX/91016019-91015899
CUCUCCUGGCCUCCCUCAAGACCCAGGCUGAAGCCUGGAGCCAGGCAGUCCAUGGCAACCCCAUUCUCUGUCCCCAGAGACAGCUCAAAUGACCAUUAACUUCUGAGCAGACACACACAG
....((((((((......))..((((((....)))))).))))))..(((.((((.....))))((((((....))))))..(((((...(........)...))))).)))........ ( -37.20)
>rn3.chrX/87692811-87692691
CUCUCCUGGCCUCCCUCAAGACCCAGGCUGCAGCCUGGAGCCAGGCAGUCCAUGACAGCCCCAUUCUCUGUCCCCAGAGACAGCUCAAAUGACCAUUAACUUCUGAGCAGACACACACAG
....((((((((......))..((((((....)))))).))))))..(((..............((((((....))))))..(((((...(........)...))))).)))........ ( -36.10)
>canFam1.chrX/56543332-56543212
AUCUCCUGGUUUCCCUCAGGACCCAAGCUGCUUCCUGGAACCAGGAAAGCCAUGGAAGCCCCAUCCUCCCUCCCUAGAAACAGCUCAAAUGACCAUUAAGCUUUGAGCAGAUGUAGGCAG
...(((((((((....(((((..(.....)..))))))))))))))..(((((((.....))))..................(((((((............))))))).......))).. ( -33.90)
>consensus
CUCUCCUGGCCUCCCUCAAGACCCAGGCUGCAGCCUGGAGCCAGGCAGUCCAUGGAAGCCCCAUCCUCCGUCCCCAGAGACAGCUCAAAUGACCAUUAACCUCUGAGCAGACACACACAG
....((((((.((......)).((((((....)))))).))))))..(((.((((.....)))).(((((....)))))...(((((................))))).)))........ (-24.85 = -25.92 +   1.06)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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