Structure #198309

Summary

Genome/Assembly	hg17
Chromosome/Contig	chrX
Strand	+
Position	68,326,851 - 68,326,957
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	78.17
Columns	120
Mean single MFE	-47.98
Consensus MFE	-33.58
Combinations/base pair	45 / 33 = 1.36
SCI	0.7
z-score	-1.81
RNA class probability	0.840742

This structure is part of cluster 110219

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  78.17
 Mean single sequence MFE: -47.98
 Consensus MFE: -33.58
 Energy contribution: -32.45
 Covariance contribution:  -1.13
 Mean z-score:  -1.81
 Structure conservation index:   0.70
 SVM decision value:   0.75
 SVM RNA-class probability: 0.840742
 Prediction: RNA

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>hg17.chrX/68326851-68326957
UCUCUGGGGACGGAGGAUGGGGCUUCCACGGACUGCCUGGCUCCAGGCAACAGCCUGCAUCCUGAGGGAGGCCAGAGGAGGAGGAGCAAGGUGAUUGCAGCUGCUG
(((((((...(..(((((((((((((....)).((((((....))))))..))))).))))))..).....)))))))((.((..((((.....))))..)).)). ( -43.40)
>mm5.chrX/91015939-91016054
UCUCUGGGGACAGAGAAUGGGGUUGCCAUGGACUGCCUGGCUCCAGGCUUCAGCCUGGGUCUUGAGGGAGGCCAGGAGAGGCGGAGCAAGGUGCCUGCUGCUGCUGCAGUUGCUG
((((((....))))))((((.....)))).((((((((((((((((((....)))))).(((....)))))))))....(((((((((.(....))))).))))))))))).... ( -54.80)
>rn3.chrX/87692731-87692842
UCUCUGGGGACAGAGAAUGGGGCUGUCAUGGACUGCCUGGCUCCAGGCUGCAGCCUGGGUCUUGAGGGAGGCCAGGAGAGGCGGAGCAAGGUGCCUGCCUGCCUGCUGCUG
((((((....))))))...((((.........((.(((((((((((((....)))))).(((....))))))))))))((((((.((.....))))))))))))....... ( -54.80)
>canFam1.chrX/56543252-56543358
UUUCUAGGGAGGGAGGAUGGGGCUUCCAUGGCUUUCCUGGUUCCAGGAAGCAGCUUGGGUCCUGAGGGAAACCAGGAGAUAAGAAGCAAGGUGCCUGUGGCUGCUG
(((((......)))))....(((..(((((((.((((((....))))))((..((((..((((..((....))))))..))))..)).....))).))))..))). ( -38.90)
>consensus
UCUCUGGGGACAGAGAAUGGGGCUGCCAUGGACUGCCUGGCUCCAGGCAGCAGCCUGGGUCCUGAGGGAGGCCAGGAGAGGAGGAGCAAGGUGCCUG_____CUGCUGCUG_________
((((((....))))))...((((..((.((..((((((((((((((((....)))))).(((....)))))))))).....)))..)).)).))))........................ (-33.58 = -32.45 +  -1.13)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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