Structure #198312

Summary

Genome/Assembly	hg17
Chromosome/Contig	chrX
Strand	-
Position	68,326,851 - 68,326,957
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	78.17
Columns	120
Mean single MFE	-37.41
Consensus MFE	-21.29
Combinations/base pair	33 / 27 = 1.22
SCI	0.57
z-score	-2.08
RNA class probability	0.775733

This structure is part of cluster 110219

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  78.17
 Mean single sequence MFE: -37.41
 Consensus MFE: -21.29
 Energy contribution: -21.73
 Covariance contribution:   0.44
 Mean z-score:  -2.08
 Structure conservation index:   0.57
 SVM decision value:   0.54
 SVM RNA-class probability: 0.775733
 Prediction: RNA

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>hg17.chrX/68326957-68326851
CAGCAGCUGCAAUCACCUUGCUCCUCCUCCUCUGGCCUCCCUCAGGAUGCAGGCUGUUGCCUGGAGCCAGGCAGUCCGUGGAAGCCCCAUCCUCCGUCCCCAGAGA
.((.((..((((.....))))..)).)).((((((........((((((..((((.(((((((....)))))))((....)))))).))))))......)))))). ( -37.54)
>mm5.chrX/91016054-91015939
CAGCAACUGCAGCAGCAGCAGGCACCUUGCUCCGCCUCUCCUGGCCUCCCUCAAGACCCAGGCUGAAGCCUGGAGCCAGGCAGUCCAUGGCAACCCCAUUCUCUGUCCCCAGAGA
..((..((((....))))...))..........(((.((((((((((......))..((((((....)))))).)))))).)).....)))........((((((....)))))) ( -41.20)
>rn3.chrX/87692842-87692731
CAGCAGCAGGCAGGCAGGCACCUUGCUCCGCCUCUCCUGGCCUCCCUCAAGACCCAGGCUGCAGCCUGGAGCCAGGCAGUCCAUGACAGCCCCAUUCUCUGUCCCCAGAGA
..(((((((((.((((((...))))))..))))...((((.((......))..))))))))).(((((....))))).(((...)))........((((((....)))))) ( -41.70)
>canFam1.chrX/56543358-56543252
CAGCAGCCACAGGCACCUUGCUUCUUAUCUCCUGGUUUCCCUCAGGACCCAAGCUGCUUCCUGGAACCAGGAAAGCCAUGGAAGCCCCAUCCUCCCUCCCUAGAAA
..((..(((..(((.....((..(((...((((((......))))))...)))..))((((((....)))))).))).)))..))..................... ( -29.20)
>consensus
_________CAGCAGCAG_____CAGGCACCUUGCUCCGCCUCUCCUGGCCUCCCUCAAGACCCAGGCUGCAGCCUGGAGCCAGGCAGUCCAUGGAAGCCCCAUCCUCCGUCCCCAGAGA
...........(((((.........(((.....))).....(((...((....))...))).....))))).(((((....))))).....((((.....)))).(((((....))))). (-21.29 = -21.73 +   0.44)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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