Structure #198338
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chrX |
| Strand | - |
| Position | 68,360,458 - 68,360,578 |
| Number of sequences | 4 |
| Organisms | human, dog, mouse, rat |
| Mean pairwise identity | 83.15 |
| Columns | 120 |
| Mean single MFE | -41.01 |
| Consensus MFE | -32.76 |
| Combinations/base pair | 45 / 35 = 1.29 |
| SCI | 0.8 |
| z-score | -2.68 |
| RNA class probability | 0.990857 |
This structure is part of cluster 110221
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 4 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 83.15 Mean single sequence MFE: -41.01 Consensus MFE: -32.76 Energy contribution: -33.45 Covariance contribution: 0.69 Mean z-score: -2.68 Structure conservation index: 0.80 SVM decision value: 2.24 SVM RNA-class probability: 0.990857 Prediction: RNA ###################################################################### >hg17.chrX/68360578-68360458 AGGAAUAGCUCCAGGAUAUUAGGCUGAAACUCGGCAAAGCUAUCCCUUCUGGAAGGCUGUUCUGCACCCCUUCCCCCUUUCUCCUCUCUUUCAAGGGGUGGGAGCAGCCUCCAUUUGGCU .(((.....))).(((((....((((.....)))).....)))))....((((.(((((((((.((((((((....................)))))))))))))))))))))....... ( -45.05) >canFam1.chrX/56562282-56562162 AGGAAUAGCUCCAGGAUAUUAGACUGAAACUCAGCAAAGUUAUCCCUUCUGGAAGGCUGUUCCACUCCCCUUCCCCCUUUCCCCUCUCCUCCCACAUGCGGGAGGGGCCUCUGUUUGGCU .(((((((((((((((((.....(((.....)))......)))))....))))..))))))))........................((((((......))))))((((.......)))) ( -39.20) >mm5.chrX/91028421-91028308 AGGAAUAGCUCCAGGAUAUUAGGCUGAAACUCAGCAAAGCUAUCCUUUCUGGAAGGCUGCUCUACUCCCCUCUCCCCUCUCCUCUUAGGGGUGGGAGAGGCCUCCAUUUGGCU .(((.(((((((((((...(((((((.....))))....)))....)))))))..)))).)))......(((((((..((((.....)))).)))))))(((.......))). ( -43.40) >rn3.chrX/87708215-87708097 AGGAAUAGCUCCAGGAUAUUAGGCUGGAACUUAGCAGAGCUAUCCCUUCUGGAAGGCUGCUCGACUCCCCUCUCCCCUCUCUUCUCUUCUUAGGAGCAGGAGGGGCCUCCAUUUGGCU .(((..((.(((((.........))))).)).....((((....((((....))))..))))...)))......(((((.((.((((.....)))).)))))))(((.......))). ( -36.40) >consensus AGGAAUAGCUCCAGGAUAUUAGGCUGAAACUCAGCAAAGCUAUCCCUUCUGGAAGGCUGCUCUACUCCCCUCCCCCCUCUCCCCUCUCCUU__AGGGGCGGGAGGGGCCUCCAUUUGGCU .(((((((((((((((((....((((.....)))).....)))))....))))..)))))))).............(((((((((((.......)))).)))))))(((.......))). (-32.76 = -33.45 + 0.69)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
