Structure #198368

Summary

Genome/Assembly	hg17
Chromosome/Contig	chrX
Strand	-
Position	68,360,498 - 68,360,618
Number of sequences	4
Organisms	human, dog, mouse, rat
Mean pairwise identity	92.92
Columns	120
Mean single MFE	-26.13
Consensus MFE	-22.18
Combinations/base pair	27 / 25 = 1.08
SCI	0.85
z-score	-1.43
RNA class probability	0.507445

This structure is part of cluster 110221

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  92.92
 Mean single sequence MFE: -26.13
 Consensus MFE: -22.18
 Energy contribution: -22.06
 Covariance contribution:  -0.12
 Mean z-score:  -1.43
 Structure conservation index:   0.85
 SVM decision value:  -0.05
 SVM RNA-class probability: 0.507445
 Prediction: RNA

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>hg17.chrX/68360618-68360498
AGCCUGAUAAAAGCAUAAUUCCACUGACCACAAUCUACCUAGGAAUAGCUCCAGGAUAUUAGGCUGAAACUCGGCAAAGCUAUCCCUUCUGGAAGGCUGUUCUGCACCCCUUCCCCCUUU
(((((((((................((......))..(((.(((.....)))))).)))))))))(((.....(((.((((.(((.....))).))))....))).....)))....... ( -26.70)
>canFam1.chrX/56562322-56562202
AGCCUGAUAAAAGCAUAAUUCCACUGACCACAAUCUACCUAGGAAUAGCUCCAGGAUAUUAGACUGAAACUCAGCAAAGUUAUCCCUUCUGGAAGGCUGUUCCACUCCCCUUCCCCCUUU
.........................................(((((((((((((((((.....(((.....)))......)))))....))))..))))))))................. ( -22.50)
>mm5.chrX/91028461-91028341
AGCCUGAUAAAAGCAUAAUUCCACUGACCACAAUCUACCUAGGAAUAGCUCCAGGAUAUUAGGCUGAAACUCAGCAAAGCUAUCCUUUCUGGAAGGCUGCUCUACUCCCCUCUCCCCUCU
(((((((((................((......))..(((.(((.....)))))).))))))))).......((((..(((.(((.....))).)))))))................... ( -26.10)
>rn3.chrX/87708255-87708135
AGCCUGAUAAAAGCAUAAUUCCAGUGACCACAAUCUACCUAGGAAUAGCUCCAGGAUAUUAGGCUGGAACUUAGCAGAGCUAUCCCUUCUGGAAGGCUGCUCGACUCCCCUCUCCCCUCU
(((((((((..............((....))......(((.(((.....)))))).)))))))))(((....(((((..((.(((.....))))).)))))....)))............ ( -29.20)
>consensus
AGCCUGAUAAAAGCAUAAUUCCACUGACCACAAUCUACCUAGGAAUAGCUCCAGGAUAUUAGGCUGAAACUCAGCAAAGCUAUCCCUUCUGGAAGGCUGCUCUACUCCCCUCCCCCCUCU
(((((.......((...(((((...................))))).))(((((((((....((((.....)))).....)))))....)))))))))...................... (-22.18 = -22.06 +  -0.12)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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