Structure #198749

Summary

Genome/Assembly hg17
Chromosome/Contig chrX
Strand +
Position 71,398,031 - 71,398,095
Number of sequences 4
Organisms human, mouse, rat, dog
Mean pairwise identity 80.29
Columns 71
Mean single MFE -21.28
Consensus MFE -17.19
Combinations/base pair 22 / 16 = 1.38
SCI 0.81
z-score -3.1
RNA class probability 0.999133

This structure is part of cluster 110447

Alignment

Alignment

[Download Clustal]

RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 71
 Columns: 71
 Strand: +
 Mean pairwise identity:  80.29
 Mean single sequence MFE: -21.27
 Consensus MFE: -17.19
 Energy contribution: -16.38
 Covariance contribution:  -0.81
 Mean z-score:  -3.10
 Structure conservation index:   0.81
 SVM decision value:   3.39
 SVM RNA-class probability: 0.999133
 Prediction: RNA

######################################################################

>hg17.chrX/71398031-71398095
AAGGAAAGGGUGAUUAUCUGCAAGUGAAAAAGUAGUUUGUACAUUUUAGAUUUCCUUUCCAGUU
..((((((((.....(((((.(((((..(((....)))...)))))))))).)))))))).... ( -15.90)
>mm5.chrX/93754285-93754354
AAGGAGAGGAUGAAGAUGGGGCUGCAAGUGAUGAAAGUGGUCUGCACUUUUCAGAUUUCCUCUCCAGUU
..((((((((((((((((((((..(...........)..)))).)).))))))....)))))))).... ( -25.10)
>rn3.chrX/90465458-90465527
AAGGAGAGGAUGAAGAUGGGGCUGCAAGUGAUGAAAGUGGUUUGCACUUUUCCGAUUUCCUCUCUAGUU
..((((((((....(..((((.((((((..((....))..))))))))))..)....)))))))).... ( -23.60)
>canFam1.chrX/59289890-59289957
AAGGAGAGGGUGAUCAUCUGCAAGUGAUGAAAAAGUGGCUUGUACAUUUUACAUUUCCUUUCCGGUU
..(((((((((((.....(((((((.((......)).)))))))....))))....))))))).... ( -20.50)
>consensus
AAGGAGAGGAUGAAGAU____CUGCAAGUGAU__AAAAGUGGUUUGCACAUUUCAGAUUUCCUCUCCAGUU
..((((((((............((((((..((......))..))))))...........)))))))).... (-17.19 = -16.38 +  -0.81) 

	

[Download RNAz result]

Consensus structure

Secondary structure graph

Secondary structure

[PS | PDF]

Montain plot

Secondary structure

[PS | PDF]

Dotplot

Secondary structure

[PS | PDF]