Structure #198750

Summary

Genome/Assembly	hg17
Chromosome/Contig	chrX
Strand	-
Position	71,398,031 - 71,398,095
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	80.29
Columns	71
Mean single MFE	-13.43
Consensus MFE	-7.91
Combinations/base pair	14 / 12 = 1.17
SCI	0.59
z-score	-2.55
RNA class probability	0.951543

This structure is part of cluster 110447

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 71
 Columns: 71
 Strand: +
 Mean pairwise identity:  80.29
 Mean single sequence MFE: -13.43
 Consensus MFE:  -7.91
 Energy contribution:  -8.47
 Covariance contribution:   0.56
 Mean z-score:  -2.55
 Structure conservation index:   0.59
 SVM decision value:   1.39
 SVM RNA-class probability: 0.951543
 Prediction: RNA

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>hg17.chrX/71398095-71398031
AACUGGAAAGGAAAUCUAAAAUGUACAAACUACUUUUUCACUUGCAGAUAAUCACCCUUUCCUU
....(((((((..........((((.................)))).........))))))).. (  -9.54)
>mm5.chrX/93754354-93754285
AACUGGAGAGGAAAUCUGAAAAGUGCAGACCACUUUCAUCACUUGCAGCCCCAUCUUCAUCCUCUCCUU
....((((((((....(((((.(((.....)))))))).....((.((......)).)))))))))).. ( -17.90)
>rn3.chrX/90465527-90465458
AACUAGAGAGGAAAUCGGAAAAGUGCAAACCACUUUCAUCACUUGCAGCCCCAUCUUCAUCCUCUCCUU
.....(((((((.....((((.(((.....)))))))......((.((......)).)))))))))... ( -13.80)
>canFam1.chrX/59289957-59289890
AACCGGAAAGGAAAUGUAAAAUGUACAAGCCACUUUUUCAUCACUUGCAGAUGAUCACCCUCUCCUU
....(((.(((...((((.....))))..........(((((.......)))))....))).))).. ( -12.50)
>consensus
AACUGGAAAGGAAAUCUAAAAAGUACAAACCACUUUC__AUCACUUGCAG____AUCAUCACCCUCUCCUU
....(((((((............(((((................))))).............))))))).. ( -7.91 =  -8.47 +   0.56) 

	

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Consensus structure

Secondary structure graph

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Montain plot

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Dotplot

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