Structure #198941

Summary

Genome/Assembly	hg17
Chromosome/Contig	chrX
Strand	+
Position	73,740,411 - 73,740,531
Number of sequences	4
Organisms	human, dog, mouse, rat
Mean pairwise identity	86.81
Columns	120
Mean single MFE	-35.2
Consensus MFE	-28.29
Combinations/base pair	51 / 38 = 1.34
SCI	0.8
z-score	-2.28
RNA class probability	0.947721

This structure is part of cluster 110520

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  86.81
 Mean single sequence MFE: -35.20
 Consensus MFE: -28.29
 Energy contribution: -26.48
 Covariance contribution:  -1.81
 Mean z-score:  -2.28
 Structure conservation index:   0.80
 SVM decision value:   1.35
 SVM RNA-class probability: 0.947721
 Prediction: RNA

######################################################################

>hg17.chrX/73740411-73740531
CAAGAACACAGGCUUGUUCAUUUUACGACCCAGCUGUAAGGAAUAGAGCAGGCUGGUGAAAGGAAUCAUGGACCGGGAAGUGUAUAUACUUAUAUACAUGACAGGCUUCCUUCCAUUUCU
......(((.(((((((((.(((((((.......)))))))....))))))))).)))...((((..(((((..(((((((((((((....)))))).......)))))))))))))))) ( -34.71)
>canFam1.chrX/60976082-60976202
CAAGAACACAGGCUUGUUCAUUUUACUACCUAGUUAUAAGUAGUAGAGCAGGCUGGUGAAAGGAAUCAUGAACUGGGAAGUGUAUGUACUUAUAUAUGUGACAGGCUUCCUUCCAUUUCU
..(((((((.(((((((((....((((((.((....)).))))))))))))))).)))...(((..........(((((((.(...(((........)))..).))))))))))..)))) ( -34.50)
>mm5.chrX/95484996-95485116
CUAGAUCAUGGGCUUGUUCAUUUUCCUACCUAGCUGUAAGUAGUAGAGUAAGCUGGUGAAAGGAAUCAUGGGCUGGGAAAUGUGUAUGUUUAUAUACAUGAUAGGCUCCCUUCCAUUUCU
.........(((((((((((((((((((((((.(((....)))))).)))((((.((((......)))).))))))))))))((((((....)))))).)))))))))............ ( -32.90)
>rn3.chrX/92147482-92147602
CUAGAUCAUGGGCUUGUUCAUUUUACUACCUAGUGGUAAGUAGUAGAGUAAGCUGGUGAAAGGAAUCAUGGACUGGGGAAUGUGUAUACUUAUAUACAUGAUAAGCUCCCUUCCAUUUCU
.....((((.(((((((((...((((((((....))).)))))..))))))))).))))..((((..(((((..((((.((((((((....))))))))......))))..))))))))) ( -38.70)
>consensus
CAAGAACACAGGCUUGUUCAUUUUACUACCUAGCUGUAAGUAGUAGAGCAAGCUGGUGAAAGGAAUCAUGGACUGGGAAAUGUAUAUACUUAUAUACAUGACAGGCUCCCUUCCAUUUCU
..(((.(((.(((((((((....((((((..........))))))))))))))).)))...((((....(((((.....((((((((....))))))))....)).))).))))...))) (-28.29 = -26.48 +  -1.81)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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