Structure #198942
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chrX |
| Strand | - |
| Position | 73,740,451 - 73,740,571 |
| Number of sequences | 4 |
| Organisms | human, dog, mouse, rat |
| Mean pairwise identity | 89.58 |
| Columns | 120 |
| Mean single MFE | -24.9 |
| Consensus MFE | -19.47 |
| Combinations/base pair | 37 / 32 = 1.16 |
| SCI | 0.78 |
| z-score | -1.39 |
| RNA class probability | 0.5 |
This structure is part of cluster 110520
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 4 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 89.58 Mean single sequence MFE: -24.90 Consensus MFE: -19.47 Energy contribution: -20.41 Covariance contribution: 0.94 Mean z-score: -1.39 Structure conservation index: 0.78 SVM decision value: -0.06 SVM RNA-class probability: 0.500000 Prediction: no RNA ###################################################################### >hg17.chrX/73740571-73740451 UAUUCACAAACAGAGAAGCAACAUUUGAAAGUAGUCAGAGAGAAAUGGAAGGAAGCCUGUCAUGUAUAUAAGUAUAUACACUUCCCGGUCCAUGAUUCCUUUCACCAGCCUGCUCUAUUC ...........((((..((......((((((.(((((........((((.(((((..(((.((((((....))))))))))))))...))))))))).))))))...))...)))).... ( -26.60) >canFam1.chrX/60976242-60976122 UAUUCACAAACAGAGAAGCAACAUUUGAAAGUAGUCAGAGAGAAAUGGAAGGAAGCCUGUCACAUAUAUAAGUACAUACACUUCCCAGUUCAUGAUUCCUUUCACCAGCCUGCUCUACUA ...........(((((.(((.....((((((.(((((..(((....(((((......(((.((........)))))....)))))...))).))))).))))))......)))))).)). ( -23.20) >mm5.chrX/95485156-95485036 UAUUCACAAACAGAGAAGCAAUGUUUUCAAGUAGUCAGAGAGAAAUGGAAGGGAGCCUAUCAUGUAUAUAAACAUACACAUUUCCCAGCCCAUGAUUCCUUUCACCAGCUUACUCUACUA ...........((((((((..((....))........(((((..((((..(((((......((((......))))......)))))...)))).....)))))....)))).)))).... ( -23.20) >rn3.chrX/92147642-92147522 UAUUCACAAACAGAGAAGCAACGUUUUCAAGUAGUCAGAGAGAAAUGGAAGGGAGCUUAUCAUGUAUAUAAGUAUACACAUUCCCCAGUCCAUGAUUCCUUUCACCAGCUUACUCUACUA ...........((((((((.((........)).....(((((..(((((.(((((.......((((((....))))))..)))))...))))).....)))))....)))).)))).... ( -26.60) >consensus UAUUCACAAACAGAGAAGCAACAUUUGAAAGUAGUCAGAGAGAAAUGGAAGGAAGCCUAUCAUGUAUAUAAGUAUACACACUUCCCAGUCCAUGAUUCCUUUCACCAGCCUACUCUACUA ...........((((((((.((........)).....(((((..(((((.(((((.......(((((((....))))))))))))...))))).....)))))....)))).)))).... (-19.47 = -20.41 + 0.94)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
