Structure #198947

Summary

Genome/Assembly	hg17
Chromosome/Contig	chrX
Strand	-
Position	73,740,571 - 73,740,687
Number of sequences	4
Organisms	human, dog, mouse, rat
Mean pairwise identity	80.99
Columns	120
Mean single MFE	-26.06
Consensus MFE	-11.15
Combinations/base pair	30 / 25 = 1.20
SCI	0.43
z-score	-3.18
RNA class probability	0.590603

This structure is part of cluster 110520

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  80.99
 Mean single sequence MFE: -26.06
 Consensus MFE: -11.15
 Energy contribution: -12.53
 Covariance contribution:   1.38
 Mean z-score:  -3.18
 Structure conservation index:   0.43
 SVM decision value:   0.11
 SVM RNA-class probability: 0.590603
 Prediction: RNA

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>hg17.chrX/73740687-73740571
GGAGGGUGGAGAAUAAGUGGGAAGGGAAAAAGGGGAUUUAACAAAAAAAGGGAAGAUGUUUCAAAAGGAAAAUUUUAAGCAAAAUAUGAACCUACCUAGUCAAUGCCACCUAAAUG
...((((((......(.((((.(((...........(((..(.......)..))).(((((.((((......))))))))).........))).)))).).....))))))..... ( -20.30)
>canFam1.chrX/60976354-60976242
GGAGGGUGGAGAAUAAGUGGGUGGGGGAAAGGGAGACUUAAAAAAAGGAAGAUGUUUCACAAGGAAAAACUUGAGGAAAAUAUAAACCUACCUAGUCAUUGCCACCUAAAUA
...((((((..(((.(.((((((((....(((....)))...............((((.((((......)))).))))........)))))))).).))).))))))..... ( -33.70)
>mm5.chrX/95485271-95485156
GGAGGGAGGAGGAUAAGGGGGUGGGAGAAGGGGACUUAAUAAAACAGGGAAGAUGUUUCAAAAGACAUUUUUGAAUAAAAUAUGAGCAACCUACCUAGUCAUUGACACCUAAAUA
..(((......(((....(((((((..(((....)))...........(((((((((......))))))))).................))))))).))).......)))..... ( -26.12)
>rn3.chrX/92147760-92147642
GGAGGGAGGAGGAUAAGGGGGUGGGAGAAAGGGGGAACUUAACAAAACAGGGAAGAUGUUUCAAAAGACAUUUUUGAAUAAAAUAUGAGCAACCUACCUAGUCAUUGACACCUAAAUA
..(((......(((....(((((((.....(((....)))...........(((((((((......))))))))).................))))))).))).......)))..... ( -24.12)
>consensus
GGAGGGAGGAGAAUAAGGGGG__GGGGAAAAAGGGGACUUAACAAAACA_GGGAAGAUGUUUCAAAAG_AAAAUUUUGAAUAAAAUAUGA___ACCUACCUAGUCAUUGACACCUAAAUA
...((((((.((.((.(((((.........(((....)))....................(((((((......)))))))..............))))).)).))....))))))..... (-11.15 = -12.53 +   1.38)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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