Structure #200582

Summary

Genome/Assembly	hg17
Chromosome/Contig	chrX
Strand	-
Position	102,843,952 - 102,844,070
Number of sequences	4
Organisms	human, dog, mouse, rat
Mean pairwise identity	84.71
Columns	120
Mean single MFE	-45.65
Consensus MFE	-27.14
Combinations/base pair	50 / 41 = 1.22
SCI	0.59
z-score	-2.22
RNA class probability	0.644815

This structure is part of cluster 111383

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  84.71
 Mean single sequence MFE: -45.65
 Consensus MFE: -27.14
 Energy contribution: -27.70
 Covariance contribution:   0.56
 Mean z-score:  -2.22
 Structure conservation index:   0.59
 SVM decision value:   0.23
 SVM RNA-class probability: 0.644815
 Prediction: RNA

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>hg17.chrX/102844070-102843952
UUUUCUAGUAAAGAAAGUCUCUGAAGCCUGGGGAUGGGGGGAGAAGAAGGUCAGUGACCCCACUGUUCCCUUUCUCCCCAGCACAGGGUCAGGGCUUGGACAGAGCCCUCCAUAGCUC
.(((((.....)))))(.(((((..((.((((((..(((((((.((..((((...))))...)).)))))))..)))))))).))))).)(((((((.....)))))))......... ( -48.30)
>canFam1.chrX/80234671-80234553
UCUUCUAGUAAAGAAGGUUUCUGAAGCCUGAGGGUGGGGGGAGGAGAAGGUCAGUGACCCCUCUGUUCCUUCUCUCCCCAGCACAGGGUCAGGGCUUGGUCAGAGACCUCCAUAGCUC
............(.(((((((((((((((((..(((.((((((.((((((.(((.(....).)))..))))))))))))..)))....))).))))...)))))))))).)....... ( -50.60)
>mm5.chrX/126836088-126835971
UCUUCUAGUAAAGAAGGUCUCUGAAGUCUGGGGUGGGGGAGGGGAGGUCAGUGACCCCACUGUUCCCUCUCUCUUCCCAGCAAAGGGUCAAGCCUUGGACACAGCCCUCCAUAACUU
.(((((.....)))))(.((((...(.((((((.(((((((((((...(((((....)))))))))))))))).)))))))..)))).)(((...((((........))))...))) ( -45.80)
>rn3.chrX/124568468-124568352
UCUUCUAGUAAAGAAGGUCUCUGAAGUCUGGGAUUGGGGAGGGGAGGUCAGUGACCCGACUGUUACUUCUCUCUCCCGGCAAAGGGUCAAGCCUUGGACACGGUCCUCCAUAACUU
((((((.....))))))........(((..((...(((((((((((..((((......))))...)))))))).)))(((.....)))....))..)))..((....))....... ( -37.90)
>consensus
UCUUCUAGUAAAGAAGGUCUCUGAAGCCUGGGG_UGGGGGAAG__GAAGGUCAGUGACCCCACUGUUCCCUCUCUC__CCCAGCAAAGGGUCAAGCCUUGGACACAGCCCUCCAUAACUC
.(((((.....)))))(.((((...(.(((((...((((((((..(((...(((((....))))))))))))))))..))))))..)))).).(((((((((........)))).))))) (-27.14 = -27.70 +   0.56)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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